Tomas Vinar

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Broňa BrejováDept. of Computer Science, Comenius University in Bratislava, SlovakiaVerified email at fmph.uniba.sk
Jozef NosekProfessor of Biochemistry, Comenius University in Bratislava, SlovakiaVerified email at uniba.sk
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Vladimir BozaIndependent researcher, Comenius UniversityVerified email at fmph.uniba.sk
Lubomir TomaskaProfessor of Genetics, Comenius University in BratislavaVerified email at uniba.sk
Kim C. WorleyProfessor, Baylor College of MedicineVerified email at bcm.edu
Carolin KosiolReader in Bioinformatics, University of St AndrewsVerified email at st-andrews.ac.uk
Therese BiedlUniversity of WaterlooVerified email at cs.uwaterloo.ca
Rute R da FonsecaUniversity of CopenhagenVerified email at binf.ku.dk
Rasmus NielsenUC Berkeley, University of CopenhagenVerified email at sund.ku.dk
Giltae SongAssociate Professor, Pusan National University, South KoreaVerified email at pusan.ac.kr
Jeffrey RogersBaylor College of MedicineVerified email at bcm.edu
Erik DemaineProfessor of Electrical Engineering and Computer Science, Massachusetts Institute of TechnologyVerified email at mit.edu
B. Franz LangCentre Robert Cedergren, Biochimie, Universite de MontrealVerified email at umontreal.ca
Melissa HubiszCornell UniversityVerified email at cornell.edu
martina nebohacovaComenius UniversityVerified email at fns.uniba.sk
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
Alejandro Lopez-OrtizProfessor and Cheriton Chair, University of WaterlooVerified email at uwaterloo.ca
Matus Valachpost-doctoral fellow, Université de Montréal, CanadaVerified email at umontreal.ca
R. Alan HarrisAssistant Professor, HGSC, Department of Molecular and Human Genetics, Baylor College of MedicineVerified email at bcm.edu

Tomas Vinar

Comenius University in Bratislava

Verified email at fmph.uniba.sk - Homepage

bioinformatics algorithms machine learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... science 316 (5822), 222-234, 2007	1513	2007
The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311-317, 2010	1399	2010
Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011	719	2011
Patterns of positive selection in six mammalian genomes C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz, CD Bustamante, R Nielsen, ... PLoS genetics 4 (8), e1000144, 2008	638	2008
The Schistosoma japonicum genome reveals features of host–parasite interplay Functional genomics analysis Liu Feng 1 2 Hu Wei 7 Wang Zhi-Qin 1 Zhang Qin ... Nature 460 (7253), 345-351, 2009	561	2009
Convergent evolution of the genomes of marine mammals AD Foote, Y Liu, GWC Thomas, T Vinař, J Alföldi, J Deng, S Dugan, ... Nature genetics 47 (3), 272-275, 2015	463	2015
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage H Bradley Shaffer, P Minx, DE Warren, AM Shedlock, RC Thomson, ... Genome biology 14, 1-23, 2013	373	2013
The genome of the hydatid tapeworm Echinococcus granulosus H Zheng, W Zhang, L Zhang, Z Zhang, J Li, G Lu, Y Zhu, Y Wang, ... Nature genetics 45 (10), 1168-1175, 2013	361	2013
DeepNano: deep recurrent neural networks for base calling in MinION nanopore reads V Boža, B Brejová, T Vinař PloS one 12 (6), e0178751, 2017	290	2017
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes AD Foote, N Vijay, MC Ávila-Arcos, RW Baird, JW Durban, M Fumagalli, ... Nature communications 7 (1), 11693, 2016	283	2016
The common marmoset genome provides insight into primate biology and evolution TMG Sequencing, Analysis Consortium Nature genetics 46 (8), 850, 2014	222	2014
The comparative genomics and complex population history of Papio baboons J Rogers, M Raveendran, RA Harris, T Mailund, K Leppälä, ... Science Advances 5 (1), eaau6947, 2019	151	2019
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria M Valach, Z Farkas, D Fricova, J Kovac, B Brejova, T Vinar, I Pfeiffer, ... Nucleic acids research 39 (10), 4202-4219, 2011	89	2011
Evolutionary genetics and implications of small size and twinning in callitrichine primates RA Harris, SD Tardif, T Vinar, DE Wildman, JN Rutherford, J Rogers, ... Proceedings of the National Academy of Sciences 111 (4), 1467-1472, 2014	86	2014
Optimal spaced seeds for homologous coding regions B Brejová, DG Brown, T Vinař Journal of Bioinformatics and Computational Biology 1 (04), 595-610, 2004	86	2004
Finding patterns in biological sequences B Brejová, C DiMarco, T Vinar, SR Hidalgo, G Holguin, C Patten Unpublished project report for CS798G, University of Waterloo, Fall, 2000	76	2000
Massive programmed translational jumping in mitochondria BF Lang, M Jakubkova, E Hegedusova, R Daoud, L Forget, B Brejova, ... Proceedings of the National Academy of Sciences 111 (16), 5926-5931, 2014	75	2014
Vector seeds: An extension to spaced seeds B Brejová, DG Brown, T Vinař Journal of Computer and System Sciences 70 (3), 364-380, 2005	74	2005
ExonHunter: a comprehensive approach to gene finding B Brejová, DG Brown, M Li, T Vinař Bioinformatics 21 (suppl_1), i57-i65, 2005	73	2005
Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution S Zhu, YZ Cao, C Jiang, BY Tan, Z Wang, S Feng, L Zhang, XH Su, ... BMC genomics 13, 1-10, 2012	61	2012

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