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Matthew D. Rasmussen
Matthew D. Rasmussen
Cornell University
Verified email at alum.mit.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-18, 2007
22552007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
19082014
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
12662011
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ...
Nature 459 (7247), 657-662, 2009
11912009
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
7142007
Genome-wide inference of ancestral recombination graphs
MD Rasmussen, MJ Hubisz, I Gronau, A Siepel
PLoS genetics 10 (5), e1004342, 2014
3402014
Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm. bioRxiv. 2014
YC Wu, MS Bansal, MD Rasmussen
Publisher Full Text, 0
184
Unified modeling of gene duplication, loss, and coalescence using a locus tree
MD Rasmussen, M Kellis
Genome research 22 (4), 755-765, 2012
1822012
Aspergillus infection in lung transplant patients: incidence and prognosis
M Iversen, CM Burton, S Vand, L Skovfoged, J Carlsen, N Milman, ...
European Journal of Clinical Microbiology & Infectious Diseases 26, 879-886, 2007
1532007
A Bayesian approach for fast and accurate gene tree reconstruction
MD Rasmussen, M Kellis
Molecular Biology and Evolution 28 (1), 273-290, 2011
1372011
gCLUTO--An interactive clustering, visualization, and analysis system
M Rasmussen, G Karypis
1312004
Effects of triptorelin versus placebo on the symptoms of endometriosis
MD Agneta Bergqvist, MD Thorbjörn Bergh, L Hogström, S Mattsson, ...
Fertility and sterility 69 (4), 702-708, 1998
1301998
TreeFix: statistically informed gene tree error correction using species trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Systematic biology 62 (1), 110-120, 2013
1232013
Accurate gene-tree reconstruction by learning gene-and species-specific substitution rates across multiple complete genomes
MD Rasmussen, M Kellis
Genome research 17 (12), 1932-1942, 2007
1092007
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Genome research 24 (3), 475-486, 2014
752014
Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
MF Lin, AN Deoras, MD Rasmussen, M Kellis
PLoS computational biology 4 (4), e1000067, 2008
632008
Ancestor-to-ancestor relationship linking methods and systems
M Rasmussen, H Madsen, G Mangum
US Patent 8,786,603, 2014
582014
Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny
YC Wu, MD Rasmussen, M Kellis
Molecular biology and evolution 29 (2), 689-705, 2012
542012
Replacing and Additive Horizontal Gene Transfer in Streptococcus
SC Choi, MD Rasmussen, MJ Hubisz, I Gronau, MJ Stanhope, A Siepel
Molecular biology and evolution 29 (11), 3309-3320, 2012
482012
Harvard FlyBase curators
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Berkeley Drosophila Genome Project, Hodges E, Hinrichs AS, Caspi A, Paten B …, 2007
372007
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