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Randy Heiland
Randy Heiland
Research Associate, Intelligent Systems Engineering, SICE, Indiana University
Verified email at iu.edu - Homepage
Title
Cited by
Cited by
Year
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, P Macklin
PLoS computational biology 14 (2), e1005991, 2018
3472018
A review of cell-based computational modeling in cancer biology
J Metzcar, Y Wang, R Heiland, P Macklin
JCO clinical cancer informatics 2, 1-13, 2019
3202019
Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model
S Ito, ME Hansen, R Heiland, A Lumsdaine, AM Litke, JM Beggs
PloS one 6 (11), e27431, 2011
2572011
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling
G Letort, A Montagud, G Stoll, R Heiland, E Barillot, P Macklin, A Zinovyev, ...
Bioinformatics 35 (7), 1188-1196, 2019
1022019
Multicell simulations of development and disease using the CompuCell3D simulation environment
MH Swat, SD Hester, AI Balter, RW Heiland, BL Zaitlen, JA Glazier
Systems Biology, 361-428, 2009
702009
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow
J Ozik, N Collier, JM Wozniak, C Macal, C Cockrell, SH Friedman, ...
BMC bioinformatics 19, 81-97, 2018
612018
Web service infrastructure for chemoinformatics
X Dong, KE Gilbert, R Guha, R Heiland, J Kim, ME Pierce, GC Fox, ...
Journal of chemical information and modeling 47 (4), 1303-1307, 2007
552007
MutDB services: interactive structural analysis of mutation data
J Dantzer, C Moad, R Heiland, S Mooney
Nucleic acids research 33 (suppl_2), W311-W314, 2005
552005
Learning-accelerated discovery of immune-tumour interactions
J Ozik, N Collier, R Heiland, G An, P Macklin
Molecular systems design & engineering 4 (4), 747-760, 2019
542019
Iterative community-driven development of a SARS-CoV-2 tissue simulator
M Getz, Y Wang, G An, M Asthana, A Becker, C Cockrell, N Collier, ...
BioRxiv, 2020.04. 02.019075, 2020
522020
MutDB: update on development of tools for the biochemical analysis of genetic variation
A Singh, A Olowoyeye, PH Baenziger, J Dantzer, MG Kann, P Radivojac, ...
Nucleic acids research 36 (suppl_1), D815-D819, 2007
522007
Visual methods for interpreting optical nonlinearity at the molecular level
RD Wampler, AJ Moad, CW Moad, R Heiland, GJ Simpson
Accounts of chemical research 40 (10), 953-960, 2007
462007
Animated rotations using quaternions and splines on a 4D sphere
GM Nielson, RW Heiland
Programming and Computer Software 18 (4), 145-154, 1992
391992
Phase-space analysis of bursting behavior in Kolmogorov flow
D Armbruster, R Heiland, EJ Kostelich, B Nicolaenko
Physica D: Nonlinear Phenomena 58 (1-4), 392-401, 1992
371992
NLOPredict: Visualization and data analysis software for nonlinear optics
AJ Moad, CW Moad, JM Perry, RD Wampler, GS Goeken, NJ Begue, ...
Journal of computational chemistry 28 (12), 1996-2002, 2007
362007
The Cell Behavior Ontology: Describing the intrinsic biological behaviors of real and model cells seen as active agents
JP Sluka, A Shirinifard, M Swat, A Cosmanescu, RW Heiland, JA Glazier
Bioinformatics, 2014
352014
k l t o o l: A tool to analyze spatiotemporal complexity
D Armbruster, R Heiland, EJ Kostelich
Chaos: An Interdisciplinary Journal of Nonlinear Science 4 (2), 421-424, 1994
351994
Identification of similar regions of protein structures using integrated sequence and structure analysis tools
B Peters, C Moad, E Youn, K Buffington, R Heiland, S Mooney
BMC structural biology 6, 1-8, 2006
242006
xml2jupyter: Mapping parameters between XML and Jupyter widgets
R Heiland, D Mishler, T Zhang, E Bower, P Macklin
Journal of open source software 4 (39), 2019
172019
A survey of co-processing systems
R Heiland, MP Baker
CEWES MSRC PET Technical Report, 98-52, 1998
171998
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Articles 1–20