Chris Smillie
Chris Smillie
Harvard Medical School, Massachusetts General Hospital, Broad Institute of MIT and Harvard
No verified email - Homepage
Cited by
Cited by
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
Nature 486, 215-221, 2012
A single-cell survey of the small intestinal epithelium
AL Haber, M Biton, N Rogel, RH Herbst, K Shekhar, C Smillie, G Burgin, ...
Nature 551 (7680), 333-339, 2017
Mobility of plasmids
C Smillie, MP Garcillán-Barcia, MV Francia, EPC Rocha, F de la Cruz
Microbiology and Molecular Biology Reviews 74 (3), 434-452, 2010
Ecology drives a global network of gene exchange connecting the human microbiome
CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm
Nature 480 (7376), 241-244, 2011
Intra-and inter-cellular rewiring of the human colon during ulcerative colitis
CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan, G Burgin, ...
Cell 178 (3), 714-730. e22, 2019
T helper cell cytokines modulate intestinal stem cell renewal and differentiation
M Biton, AL Haber, N Rogel, G Burgin, S Beyaz, A Schnell, O Ashenberg, ...
Cell 175 (5), 1307-1320. e22, 2018
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ...
Nature medicine 26 (5), 792-802, 2020
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
M Groussin, F Mazel, JG Sanders, CS Smillie, S Lavergne, W Thuiller, ...
Nature Communications 8 (1), 14319, 2017
Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation
CS Smillie, J Sauk, D Gevers, J Friedman, J Sung, I Youngster, ...
Cell host & microbe 23 (2), 229-240. e5, 2018
Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease
E Papa, M Docktor, C Smillie, S Weber, SP Preheim, D Gevers, ...
PLoS ONE 7 (6), e39242, 2012
The human and mouse enteric nervous system at single-cell resolution
E Drokhlyansky, CS Smillie, N Van Wittenberghe, M Ericsson, GK Griffin, ...
Cell 182 (6), 1606-1622. e23, 2020
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine 27 (3), 546-559, 2021
Mobile genes in the human microbiome are structured from global to individual scales
IL Brito, S Yilmaz, K Huang, L Xu, SD Jupiter, AP Jenkins, W Naisilisili, ...
Nature 535 (7612), 435-439, 2016
Spatially organized multicellular immune hubs in human colorectal cancer
K Pelka, M Hofree, JH Chen, S Sarkizova, JD Pirl, V Jorgji, A Bejnood, ...
Cell 184 (18), 4734-4752. e20, 2021
Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome
T Jarvik, C Smillie, EA Groisman, H Ochman
Journal of bacteriology 192 (2), 560-567, 2010
Probiotic bacteria induce a ‘glow of health’
T Levkovich, T Poutahidis, C Smillie, BJ Varian, YM Ibrahim, JR Lakritz, ...
PloS one 8 (1), e53867, 2013
Microbial reprogramming inhibits Western diet-associated obesity
T Poutahidis, M Kleinewietfeld, C Smillie, T Levkovich, A Perrotta, S Bhela, ...
PloS one 8 (7), e68596, 2013
Natural bacterial communities serve as quantitative geochemical biosensors
MB Smith, AM Rocha, CS Smillie, SW Olesen, C Paradis, L Wu, ...
MBio 6 (3), 10.1128/mbio. 00326-15, 2015
Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions
MR Filbin, A Mehta, AM Schneider, KR Kays, JR Guess, M Gentili, ...
Cell Reports Medicine 2 (5), 2021
Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases
EM Weeks, JC Ulirsch, NY Cheng, BL Trippe, RS Fine, J Miao, ...
Nature genetics 55 (8), 1267-1276, 2023
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