Maude Pupin
Maude Pupin
Maître de conférences en informatique, Université de Lille
Verified email at - Homepage
Cited by
Cited by
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
F Kunst, N Ogasawara, I Moszer, AM Albertini, GO Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
NORINE: a database of nonribosomal peptides
S Caboche, M Pupin, V Leclère, A Fontaine, P Jacques, G Kucherov
Nucleic acids research 36 (suppl 1), D326-D331, 2008
Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity
S Caboche, V Leclère, M Pupin, G Kucherov, P Jacques
Journal of bacteriology 192 (19), 5143-5150, 2010
A revised annotation and comparative analysis of Helicobacter pylori genomes
IG Boneca, H Reuse, JC Epinat, M Pupin, A Labigne, I Moszer
Nucleic Acids Research 31 (6), 1704-1714, 2003
Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.
M Béchet, T Caradec, W Hussein, A Abderrahmani, M Chollet, V Leclère, ...
Applied microbiology and biotechnology 95 (3), 593-600, 2012
Norine: update of the nonribosomal peptide resource
A Flissi, E Ricart, C Campart, M Chevalier, Y Dufresne, J Michalik, ...
Nucleic acids research 48 (D1), D465-D469, 2020
Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis
Q Esmaeel, M Pupin, NP Kieu, G Chataigné, M Béchet, J Deravel, F Krier, ...
MicrobiologyOpen 5 (3), 512-526, 2016
Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals
Q Esmaeel, M Pupin, P Jacques, V Leclère
Environmental Science and Pollution Research 25 (30), 29794-29807, 2018
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
A Flissi, Y Dufresne, J Michalik, L Tonon, S Janot, L Noé, P Jacques, ...
Nucleic acids research 44 (D1), D1113-D1118, 2015
Structural pattern matching of nonribosomal peptides
S Caboche, M Pupin, V Leclère, P Jacques, G Kucherov
BMC structural biology 9 (1), 15, 2009
Norine: a powerful resource for novel nonribosomal peptide discovery
M Pupin, Q Esmaeel, A Flissi, Y Dufresne, P Jacques, V Leclère
Synthetic and Systems Biotechnology 1 (2), 89-94, 2016
Prediction of new bioactive molecules using a bayesian belief network
A Abdo, V Leclère, P Jacques, N Salim, M Pupin
Journal of chemical information and modeling 54 (1), 30-36, 2014
Prediction of monomer isomery in Florine: a workflow dedicated to nonribosomal peptide discovery
T Caradec, M Pupin, A Vanvlassenbroeck, MD Devignes, ...
PloS one 9 (1), e85667, 2014
rBAN: retro-biosynthetic analysis of nonribosomal peptides
E Ricart, V Leclère, A Flissi, M Mueller, M Pupin, F Lisacek
Journal of cheminformatics 11 (1), 1-14, 2019
A new fingerprint to predict nonribosomal peptides activity
A Abdo, S Caboche, V Leclère, P Jacques, M Pupin
Journal of computer-aided molecular design 26 (10), 1187-1194, 2012
Comparing sequences without using alignments: application to HIV/SIV subtyping
G Didier, L Debomy, M Pupin, M Zhang, A Grossmann, C Devauchelle, ...
BMC bioinformatics 8 (1), 1, 2007
Detecting localized repeats in genomic sequences: a new strategy and its application to Bacillus subtilis and Arabidopsis thaliana sequences
M Klaerr-Blanchard, H Chiapello, E Coward
Computers & chemistry 24 (1), 57-70, 2000
Automatic annotation and dereplication of tandem mass spectra of peptidic natural products
E Ricart, M Pupin, M Müller, F Lisacek
Analytical Chemistry 92 (24), 15862-15871, 2020
Smiles2Monomers: a link between chemical and biological structures for polymers
Y Dufresne, L Noé, V Leclère, M Pupin
Journal of cheminformatics 7 (1), 62, 2015
Local decoding of sequences and alignment-free comparison
G Didier, I Laprevotte, M Pupin, A Hénaut
Journal of Computational Biology 13 (8), 1465-1476, 2006
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