Mustafa Khammash

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Brian MunskyColorado State UniversityVerified email at colostate.edu
Corentin BriatSenior Scientist - ETH-ZürichVerified email at briat.info
Hana El-SamadUniveresity of California, San FranciscoVerified email at ucsf.edu
Andreas Milias-ArgeitisAssociate Professor, University of GroningenVerified email at rug.nl
Gabriele LillacciPostdoc in Control Theory and Systems Biology, ETH Zürich D-BSSEVerified email at bsse.ethz.ch
John DoyleCaltechVerified email at caltech.edu
Linda PetzoldProfessor, University of California Santa BarbaraVerified email at cs.ucsb.edu
Patrick W. SheppardFormerly: Postdoctoral Scholar, UCSB and Control Theory and Systems Biology Group, D-BSSE ETH-ZürichVerified email at engineering.ucsb.edu
John LygerosProf. of Computation and Control, ETH ZurichVerified email at ethz.ch
Brian DrawertComputer Science, University of North Carolina - AshevilleVerified email at unca.edu
Manfred MorariElectrical and Systems Engineering, U. of PennsylvaniaVerified email at seas.upenn.edu
Antonis PapachristodoulouUniversity of OxfordVerified email at eng.ox.ac.uk
Joao HespanhaProfessor of Electrical and Computer Engineering, University of California at Santa BarbaraVerified email at ece.ucsb.edu
Jesse GoffIowa State UniversityVerified email at iastate.edu
Nader MoteeProfessor, Lehigh UniversityVerified email at lehigh.edu
Karl Johan ÅströmDepartment of Automatic Control, Lund UniversityVerified email at control.lth.se
Michael J LawsonCalifornia Institute of TechnologyVerified email at caltech.edu
Sean SummersPostdoctoral Researcher, Automatic Control Lab, ETH ZurichVerified email at control.ee.ethz.ch
Ignacio A. Zuletasuperpixel.ioVerified email at geneautomata.com
Gregor NeuertVanderbilt University, School of MedicineVerified email at vanderbilt.edu

Mustafa Khammash

Department of Biosystems Science and Engineering, ETH Zurich

Verified email at bsse.ethz.ch - Homepage

Systems biology synthetic biology control theory


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The finite state projection algorithm for the solution of the chemical master equation B Munsky, M Khammash The Journal of chemical physics 124 (4), 044104, 2006	839	2006
Parameter estimation and model selection in computational biology G Lillacci, M Khammash PLoS computational biology 6 (3), e1000696, 2010	369	2010
Antithetic integral feedback ensures robust perfect adaptation in noisy biomolecular networks C Briat, A Gupta, M Khammash Cell systems 2 (1), 15-26, 2016	324	2016
Surviving heat shock: control strategies for robustness and performance H El-Samad, H Kurata, JC Doyle, CA Gross, M Khammash Proceedings of the National Academy of Sciences 102 (8), 2736-2741, 2005	322	2005
Performance robustness of discrete-time systems with structured uncertainty M Khammash, JB Pearson 29th IEEE Conference on Decision and Control, 414-420, 1990	318	1990
In silico feedback for in vivo regulation of a gene expression circuit A Milias-Argeitis, S Summers, J Stewart-Ornstein, I Zuleta, D Pincus, ... Nature biotechnology 29 (12), 1114-1116, 2011	315	2011
Systematic identification of signal-activated stochastic gene regulation G Neuert, B Munsky, RZ Tan, L Teytelman, M Khammash, ... Science 339 (6119), 584-587, 2013	280	2013
Listening to the noise: random fluctuations reveal gene network parameters B Munsky, B Trinh, M Khammash Molecular systems biology 5 (1), 318, 2009	244	2009
Calcium homeostasis and parturient hypocalcemia: an integral feedback perspective H El-Samad, JP Goff, M Khammash Journal of theoretical biology 214 (1), 17-29, 2002	222	2002
A universal biomolecular integral feedback controller for robust perfect adaptation SK Aoki, G Lillacci, A Gupta, A Baumschlager, D Schweingruber, ... Nature 570 (7762), 533-537, 2019	219	2019
Automated optogenetic feedback control for precise and robust regulation of gene expression and cell growth A Milias-Argeitis, M Rullan, SK Aoki, P Buchmann, M Khammash Nature communications 7 (1), 12546, 2016	212	2016
Structured optimal and robust control with multiple criteria: A convex solution X Qi, MV Salapaka, PG Voulgaris, M Khammash IEEE Transactions on Automatic Control 49 (10), 1623-1640, 2004	207	2004
Stochastic modelling of gene regulatory networks H El Samad, M Khammash, L Petzold, D Gillespie International Journal of Robust and Nonlinear Control: IFAC‐Affiliated …, 2005	198	2005
Automatic crosswind flight of tethered wings for airborne wind energy: Modeling, control design, and experimental results L Fagiano, AU Zgraggen, M Morari, M Khammash IEEE Transactions on Control Systems Technology 22 (4), 1433-1447, 2013	197	2013
Direct solution of the chemical master equation using quantized tensor trains V Kazeev, M Khammash, M Nip, C Schwab PLoS computational biology 10 (3), e1003359, 2014	171	2014
Reduction and solution of the chemical master equation using time scale separation and finite state projection S Peleš, B Munsky, M Khammash The Journal of chemical physics 125 (20), 204104, 2006	161	2006
Robust power system stabilizer design using/spl Hscr//sub/spl infin//loop shaping approach C Zhu, M Khammash, V Vittal, W Qiu IEEE Transactions on Power Systems 18 (2), 810-818, 2003	157	2003
Digital quantification of proteins and mRNA in single mammalian cells C Albayrak, CA Jordi, C Zechner, J Lin, CA Bichsel, M Khammash, S Tay Molecular cell 61 (6), 914-924, 2016	149	2016
Module-based analysis of robustness tradeoffs in the heat shock response system H Kurata, H El-Samad, R Iwasaki, H Ohtake, JC Doyle, I Grigorova, ... PLoS computational biology 2 (7), e59, 2006	137	2006
Controller design for plants with structured uncertainty MA Dahleh, MH Khammash Automatica 29 (1), 37-56, 1993	125	1993

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