| Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa RC Albertson, JA Markert, PD Danley, TD Kocher Proceedings of the National Academy of Sciences 96 (9), 5107-5110, 1999 | 460 | 1999 |
| The stages of vertebrate evolutionary radiation JT Streelman, PD Danley Trends in Ecology & Evolution 18 (3), 126-131, 2003 | 421 | 2003 |
| Speciation in rapidly diverging systems: lessons from Lake Malawi PD Danley, TD Kocher Molecular Ecology 10 (5), 1075-1086, 2001 | 380 | 2001 |
| Population structure and colour variation of the cichlid fishes Labeotropheus fuelleborni Ahl along a recently formed archipelago of rocky habitat patches in southern Lake Malawi ME Arnegard, JA Markert, PD Danley, JR Stauffer Jr, AJ Ambali, ... Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1999 | 151 | 1999 |
| The impact of the geologic history and paleoclimate on the diversification of East African cichlids PD Danley, M Husemann, B Ding, LM DiPietro, EJ Beverly, DJ Peppe International Journal of Evolutionary Biology 2012, 2012 | 114 | 2012 |
| Divergence with gene flow in the rock‐dwelling cichlids of Lake Malawi PD Danley, JA Markert, ME Arnegard, TD Kocher Evolution 54 (5), 1725-1737, 2000 | 114 | 2000 |
| Biogeography and population genetics of the Lake Malawi cichlid Melanochromis auratus: habitat transience, philopatry and speciation JA Markert, ME Arnegard, PD Danley, TD Kocher Molecular Ecology 8 (6), 1013-1026, 1999 | 114 | 1999 |
| Age and growth estimates of the thorny skate (Amblyraja radiata) in the western Gulf of Maine JA Sulikowski, J Kneebone, S Elzey, J Jurek, PD Danley, WH Howell, ... Fishery Bulletin, 2005 | 98 | 2005 |
| The relevance of time series in molecular ecology and conservation biology JC Habel, M Husemann, A Finger, PD Danley, FE Zachos Biological Reviews 89 (2), 484-492, 2014 | 89 | 2014 |
| A direct assay of female choice in cichlids: all the eggs in one basket MR Kidd, PD Danley, TD Kocher Journal of Fish Biology 68 (2), 373-384, 2006 | 84 | 2006 |
| The reproductive cycle of the thorny skate (Amblyraid radiata) in the western Gulf of Maine JA Sulikowski, J Kneebone, S Elzey, J Jurek, PD Danley, WH Howell, ... Fishery Bulletin, 2005 | 66 | 2005 |
| Mitochondrial capture and incomplete lineage sorting in the diversification of balitorine loaches (Cypriniformes, Balitoridae) revealed by mitochondrial and nuclear genes QY Tang, SQ Liu, D Yu, HZ Liu, PD Danley Zoologica Scripta 41 (3), 233-247, 2012 | 56 | 2012 |
| Comparative biogeography reveals differences in population genetic structure of five species of stream fishes M Husemann, JW Ray, RS King, EA Hooser, PD Danley Biological Journal of the Linnean Society 107 (4), 867-885, 2012 | 53 | 2012 |
| Explosive speciation and adaptive radiation of East African cichlid fishes C Sturmbauer, M Husemann, PD Danley Biodiversity Hotspots: Distribution and Protection of Conservation Priority …, 2011 | 51 | 2011 |
| Aggression in closely related Malawi cichlids varies inversely with habitat complexity PD Danley Environmental Biology of Fishes 92, 275-284, 2011 | 39 | 2011 |
| Phylogenetic analyses of band‐winged grasshoppers (Orthoptera, Acrididae, Oedipodinae) reveal convergence of wing morphology M Husemann, S Namkung, JC Habel, PD Danley, A Hochkirch Zoologica Scripta 41 (5), 515-526, 2012 | 37 | 2012 |
| New markers for new species: microsatellite loci and the East African cichlids JA Markert, PD Danley, ME Arnegard Trends in ecology & evolution 16 (2), 100-107, 2001 | 36 | 2001 |
| Acoustic diversity in Lake Malawi’s rock-dwelling cichlids PD Danley, M Husemann, J Chetta Environmental Biology of Fishes 93, 23-30, 2012 | 31 | 2012 |
| A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution PD Danley, SP Mullen, F Liu, V Nene, J Quackenbush, KL Shaw BMC genomics 8, 1-16, 2007 | 29 | 2007 |
| Quantitative Genetic Analyses of Male Color Pattern and Female Mate Choice in a Pair of Cichlid Fishes of Lake Malawi, East Africa. B Ding, DW Daugherty, M Husemann, M Chen, AE Howe, PD Danley PloS one 9 (12), e114798-e114798, 2014 | 27 | 2014 |
