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Kasper D. Hansen
Kasper D. Hansen
Department of Biostatistics, Johns Hopkins University
Verified email at jhsph.edu - Homepage
Title
Cited by
Cited by
Year
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ...
Bioinformatics 30 (10), 1363-1369, 2014
37352014
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
35032015
Genetic effects on gene expression across human tissues
GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ...
Nature 550 (7675), 204-213, 2017
33702017
The GTEx Consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium
Science 369 (6509), 1318-1330, 2020
27052020
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
JH Bullard, E Purdom, KD Hansen, S Dudoit
BMC bioinformatics 11, 1-13, 2010
21072010
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
11992011
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
10862010
Biases in Illumina transcriptome sequencing caused by random hexamer priming
KD Hansen, SE Brenner, S Dudoit
Nucleic acids research 38 (12), e131-e131, 2010
8952010
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 503, 2014
8282014
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13, 1-10, 2012
7722012
The impact of sex on gene expression across human tissues
M Oliva, M Muñoz-Aguirre, S Kim-Hellmuth, V Wucher, ADH Gewirtz, ...
Science 369 (6509), eaba3066, 2020
7332020
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
JP Fortin, TJ Triche Jr, KD Hansen
Bioinformatics 33 (4), 558-560, 2017
6932017
Removing technical variability in RNA-seq data using conditional quantile normalization
KD Hansen, RA Irizarry, Z Wu
Biostatistics 13 (2), 204-216, 2012
6762012
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
5502017
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11, 1-11, 2010
4352010
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
3982017
Common DNA methylation alterations in multiple brain regions in autism
C Ladd-Acosta, KD Hansen, E Briem, MD Fallin, WE Kaufmann, ...
Molecular psychiatry 19 (8), 862-871, 2014
3662014
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371-1373, 2012
3622012
Social environment is associated with gene regulatory variation in the rhesus macaque immune system
J Tung, LB Barreiro, ZP Johnson, KD Hansen, V Michopoulos, D Toufexis, ...
Proceedings of the National Academy of Sciences 109 (17), 6490-6495, 2012
3472012
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
JP Fortin, KD Hansen
Genome biology 16, 1-23, 2015
3172015
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Articles 1–20