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Kasper D. Hansen
Kasper D. Hansen
Department of Biostatistics, Johns Hopkins University
Verified email at jhsph.edu - Homepage
Title
Cited by
Cited by
Year
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ...
Bioinformatics 30 (10), 1363-1369, 2014
36932014
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
34532015
Genetic effects on gene expression across human tissues
GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ...
Nature 550 (7675), 204-213, 2017
33382017
The GTEx Consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium
Science 369 (6509), 1318-1330, 2020
25992020
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
JH Bullard, E Purdom, KD Hansen, S Dudoit
BMC bioinformatics 11 (1), 1-13, 2010
20812010
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
11962011
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
10852010
Biases in Illumina transcriptome sequencing caused by random hexamer priming
KD Hansen, SE Brenner, S Dudoit
Nucleic acids research 38 (12), e131-e131, 2010
8882010
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 503, 2014
8212014
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13, 1-10, 2012
7662012
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
JP Fortin, TJ Triche Jr, KD Hansen
Bioinformatics 33 (4), 558-560, 2017
6792017
Removing technical variability in RNA-seq data using conditional quantile normalization
KD Hansen, RA Irizarry, Z Wu
Biostatistics 13 (2), 204-216, 2012
6712012
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
5382017
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11, 1-11, 2010
4372010
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
3892017
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371-1373, 2012
3652012
Common DNA methylation alterations in multiple brain regions in autism
C Ladd-Acosta, KD Hansen, E Briem, MD Fallin, WE Kaufmann, ...
Molecular psychiatry 19 (8), 862-871, 2014
3612014
Social environment is associated with gene regulatory variation in the rhesus macaque immune system
J Tung, LB Barreiro, ZP Johnson, KD Hansen, V Michopoulos, D Toufexis, ...
Proceedings of the National Academy of Sciences 109 (17), 6490-6495, 2012
3442012
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
JP Fortin, KD Hansen
Genome biology 16, 1-23, 2015
3162015
A quantitative proteome map of the human body
L Jiang, M Wang, S Lin, R Jian, X Li, J Chan, G Dong, H Fang, ...
Cell 183 (1), 269-283. e19, 2020
2982020
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