Simone Linz
Simone Linz
Associate Professor, School of Computer Science, University of Auckland, New Zealand
Verified email at - Homepage
Cited by
Cited by
PRODORIC: prokaryotic database of gene regulation
R Münch, K Hiller, H Barg, D Heldt, S Linz, E Wingender, D Jahn
Nucleic acids research 31 (1), 266-269, 2003
A reduction algorithm for computing the hybridization number of two trees
M Bordewich, S Linz, KS John, C Semple
Evolutionary Bioinformatics 3, 117693430700300017, 2007
A likelihood framework to measure horizontal gene transfer
S Linz, A Radtke, A Von Haeseler
Molecular biology and evolution 24 (6), 1312-1319, 2007
Quantifying hybridization in realistic time
J Collins, S Linz, C Semple
Journal of Computational Biology 18 (10), 1305-1318, 2011
Hybridization in nonbinary trees
S Linz, C Semple
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 30-45, 2008
Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
M Bordewich, S Linz, C Semple
Journal of theoretical biology 423, 1-12, 2017
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set
S Kelk, L Van Iersel, N Lekic, S Linz, C Scornavacca, L Stougie
SIAM journal on discrete mathematics 26 (4), 1635-1656, 2012
Phylogenetic networks that display a tree twice
P Cordue, S Linz, C Semple
Bulletin of mathematical biology 76, 2664-2679, 2014
A quadratic kernel for computing the hybridization number of multiple trees
L Van Iersel, S Linz
Information Processing Letters 113 (9), 318-323, 2013
Identifying a species tree subject to random lateral gene transfer
M Steel, S Linz, DH Huson, MJ Sanderson
Journal of theoretical biology 322, 81-93, 2013
A cluster reduction for computing the subtree distance between phylogenies
S Linz, C Semple
Annals of combinatorics 15 (3), 465-484, 2011
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations
KT Huber, S Linz, V Moulton, T Wu
Journal of Mathematical Biology 72 (3), 699-725, 2016
Counting trees in a phylogenetic network is\# P-complete
S Linz, KS John, C Semple
SIAM journal on computing 42 (4), 1768-1776, 2013
Autumn Algorithm–Computation of Hybridization Networks for Realistic Phylogenetic Trees
D Huson, S Linz
IEEE/ACM transactions on computational biology and bioinformatics 15, 398-410, 2018
Cherry picking: a characterization of the temporal hybridization number for a set of phylogenies
PJ Humphries, S Linz, C Semple
Bulletin of mathematical biology 75 (10), 1879-1890, 2013
Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies
S Linz, C Semple
Advances in Applied Mathematics 105, 102-129, 2019
A first step toward computing all hybridization networks for two rooted binary phylogenetic trees
C Scornavacca, S Linz, B Albrecht
Journal of Computational Biology 19 (11), 1227-1242, 2012
Analyzing and reconstructing reticulation networks under timing constraints
S Linz, C Semple, T Stadler
Journal of mathematical biology 61, 715-737, 2010
On the complexity of computing the temporal hybridization number for two phylogenies
PJ Humphries, S Linz, C Semple
Discrete Applied Mathematics 161 (7-8), 871-880, 2013
A tight kernel for computing the tree bisection and reconnection distance between two phylogenetic trees
S Kelk, S Linz
SIAM Journal on Discrete Mathematics 33 (3), 1556-1574, 2019
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