Simone Linz

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Charles SempleProfessor of Mathematics, University of CanterburyVerified email at canterbury.ac.nz
Steven KelkAssociate professor, Department of Advanced Computing Sciences, Maastricht UniversityVerified email at maastrichtuniversity.nl
Katherine St. JohnCity University of New YorkVerified email at hunter.cuny.edu
Magnus BordewichProfessor of Computer Science, Durham UniversityVerified email at durham.ac.uk
Janosch DöckerVerified email at auckland.ac.nz
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Karsten HillerUniversity of BraunschweigVerified email at tu-braunschweig.de
Dieter JahnProfessorof Microbiology Technische Universität BraunschweigVerified email at tu-bs.de
Daniel H. HusonProfessor of Algorithms in Bioinformatics, University of TuebingenVerified email at uni-tuebingen.de
Michael J. DinneenComputer Science, University of Auckland, New ZealandVerified email at cs.auckland.ac.nz
Arndt von HaeselerMax Perutz Labs University of Vienna, Medical University of ViennaVerified email at univie.ac.at
Celine ScornavaccaInstitut des Sciences de l'Evolution, MontpellierVerified email at umontpellier.fr
Nela LekicPhD candidate, Maastricht UniversityVerified email at maastrichtuniversity.nl
Kristina WickeAssistant Professor, New Jersey Institute of TechnologyVerified email at njit.edu
Nguyet TranThe University of AucklandVerified email at aucklanduni.ac.nz
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Prof. Mike SteelUniversity of Canterbury, New ZealandVerified email at canterbury.ac.nz
Michael J. SandersonProfessor of Ecology and Evolutionary Biology, University of ArizonaVerified email at email.arizona.edu
taoyang wuLecturer of Computational Biology, University of East AngliaVerified email at uea.ac.uk
Georgios StamoulisDepartment of Advanced Computing Sciences, Maastricht University, The NetherlandsVerified email at maastrichtuniversity.nl

Simone Linz

Associate Professor, School of Computer Science, University of Auckland, New Zealand

Verified email at auckland.ac.nz - Homepage

algorithms combinatorics phylogenetics


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PRODORIC: prokaryotic database of gene regulation R Münch, K Hiller, H Barg, D Heldt, S Linz, E Wingender, D Jahn Nucleic acids research 31 (1), 266-269, 2003	305	2003
A reduction algorithm for computing the hybridization number of two trees M Bordewich, S Linz, KS John, C Semple Evolutionary Bioinformatics 3, 117693430700300017, 2007	62	2007
A likelihood framework to measure horizontal gene transfer S Linz, A Radtke, A Von Haeseler Molecular biology and evolution 24 (6), 1312-1319, 2007	48	2007
Quantifying hybridization in realistic time J Collins, S Linz, C Semple Journal of Computational Biology 18 (10), 1305-1318, 2011	45	2011
Hybridization in nonbinary trees S Linz, C Semple IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 30-45, 2008	39	2008
Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks M Bordewich, S Linz, C Semple Journal of theoretical biology 423, 1-12, 2017	32	2017
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set S Kelk, L Van Iersel, N Lekic, S Linz, C Scornavacca, L Stougie SIAM journal on discrete mathematics 26 (4), 1635-1656, 2012	28	2012
Autumn Algorithm–Computation of Hybridization Networks for Realistic Phylogenetic Trees D Huson, S Linz IEEE/ACM transactions on computational biology and bioinformatics 15, 398-410, 2018	26*	2018
A cluster reduction for computing the subtree distance between phylogenies S Linz, C Semple Annals of combinatorics 15 (3), 465-484, 2011	26	2011
Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies S Linz, C Semple Advances in Applied Mathematics 105, 102-129, 2019	25	2019
Phylogenetic networks that display a tree twice P Cordue, S Linz, C Semple Bulletin of mathematical biology 76, 2664-2679, 2014	25	2014
A quadratic kernel for computing the hybridization number of multiple trees L Van Iersel, S Linz Information Processing Letters 113 (9), 318-323, 2013	25	2013
Identifying a species tree subject to random lateral gene transfer M Steel, S Linz, DH Huson, MJ Sanderson Journal of theoretical biology 322, 81-93, 2013	25	2013
Counting trees in a phylogenetic network is\# P-complete S Linz, KS John, C Semple SIAM journal on computing 42 (4), 1768-1776, 2013	25	2013
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations KT Huber, S Linz, V Moulton, T Wu Journal of Mathematical Biology 72 (3), 699-725, 2016	24	2016
Cherry picking: a characterization of the temporal hybridization number for a set of phylogenies PJ Humphries, S Linz, C Semple Bulletin of mathematical biology 75 (10), 1879-1890, 2013	24	2013
On the quirks of maximum parsimony and likelihood on phylogenetic networks C Bryant, M Fischer, S Linz, C Semple Journal of theoretical biology 417, 100-108, 2017	15	2017
A first step toward computing all hybridization networks for two rooted binary phylogenetic trees C Scornavacca, S Linz, B Albrecht Journal of Computational Biology 19 (11), 1227-1242, 2012	15	2012
Analyzing and reconstructing reticulation networks under timing constraints S Linz, C Semple, T Stadler Journal of mathematical biology 61, 715-737, 2010	15	2010
A tight kernel for computing the tree bisection and reconnection distance between two phylogenetic trees S Kelk, S Linz SIAM Journal on Discrete Mathematics 33 (3), 1556-1574, 2019	14	2019

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