Jullien Flynn
Jullien Flynn
Whitehead MIT
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Cited by
RepeatModeler2 for automated genomic discovery of transposable element families
JM Flynn, R Hubley, C Goubert, J Rosen, AG Clark, C Feschotte, AF Smit
Proceedings of the National Academy of Sciences 117 (17), 9451-9457, 2020
Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods
JM Flynn, EA Brown, FJJ Chain, HJ MacIsaac, ME Cristescu
Ecology and evolution 5 (11), 2252-2266, 2015
Spontaneous Mutation Accumulation in Daphnia pulex in Selection-Free vs. Competitive Environments
JM Flynn, FJJ Chain, DJ Schoen, ME Cristescu
Molecular biology and evolution 34 (1), 160-173, 2017
Selection constrains high rates of tandem repetitive DNA mutation in Daphnia pulex
JM Flynn, I Caldas, ME Cristescu, AG Clark
Genetics 207 (2), 697-710, 2017
Genome assembly, structural variants, and genetic differentiation between Lake Whitefish young species pairs (Coregonus sp.) with long and short reads
C Mérot, KSR Stenløkk, C Venney, M Laporte, M Moser, E Normandeau, ...
Molecular Ecology,, 2022
Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome of Drosophila virilis
JM Flynn, M Long, RA Wing, AG Clark
Molecular Biology and Evolution 37 (5), 1362-1375, 2020
Accelerated rates of large-scale mutations in the presence of copper and nickel
FJJ Chain, JM Flynn, JK Bull, ME Cristescu
Genome research 29 (1), 64-73, 2019
Rates and Patterns of Mutation in Tandem Repetitive DNA in Six Independent Lineages of Chlamydomonas reinhardtii
JM Flynn, SE Lower, DA Barbash, AG Clark
Genome biology and evolution 10 (7), 1673-1686, 2018
Fitness and genomic consequences of chronic exposure to low levels of copper and nickel in Daphnia pulex mutation accumulation lines
JK Bull, JM Flynn, FJJ Chain, ME Cristescu
G3: Genes, Genomes, Genetics 9 (1), 61-71, 2019
Three recent sex chromosome-to-autosome fusions in a Drosophila virilis strain with high satellite DNA content
JM Flynn, KB Hu, AG Clark
Genetics,, 2023
Copy number evolution in simple and complex tandem repeats across the C57BL/6 and C57BL/10 inbred mouse lines
JM Flynn, EJ Brown, AG Clark
G3 11 (8), jkab184, 2021
The implications of satellite DNA instability on cellular function and evolution
JM Flynn, YM Yamashita
Seminars in Cell & Developmental Biology, 2023
High quality genome assemblies reveal evolutionary dynamics of repetitive DNA and structural rearrangements in the Drosophila virilis sub-group
JM Flynn, YH Ahmed-Braimah, M Long, RA Wing, AG Clark
Genome Biology and Evolution 16 (, 2023
The implications of satellite DNA instability on cellular function and evolution
YM Flynn, Jullien M., Yamashita
OSF Preprints,, 2023
Evolution of Repetitive DNA: Methodologies, Expansions, and Constraints
JM Flynn
Cornell University, 2021
Spontaneous mutation rates and spectra with and without the influence of natural selection in Daphnia pulex
J Flynn
McGill University Libraries, 2016
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