Follow
Farrokh Mehryary
Title
Cited by
Cited by
Year
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
Nucleic acids research 51 (D1), D638-D646, 2023
10832023
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
4122016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
3512019
Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task
A Sarker, M Belousov, J Friedrichs, K Hakala, S Kiritchenko, F Mehryary, ...
Journal of the American Medical Informatics Association 25 (10), 1274-1283, 2018
882018
Overview of DrugProt BioCreative VII track: quality evaluation and large scale text mining of drug-gene/protein relations
A Miranda, F Mehryary, J Luoma, S Pyysalo, A Valencia, M Krallinger
Proceedings of the seventh BioCreative challenge evaluation workshop, 11-21, 2021
692021
Deep learning with minimal training data: TurkuNLP entry in the BioNLP shared task 2016
F Mehryary, J Björne, S Pyysalo, T Salakoski, F Ginter
Proceedings of the 4th BioNLP shared task workshop, 73-81, 2016
422016
The STRING database in 2023: Protein-protein association networks and functional enrichment analyses for any sequenced genome of interest., 2023, 51, pp
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
D638-D646. DOI: https://doi. org/10.1093/nar/gkac1000, 0
27
Neural network and random forest models in protein function prediction
K Hakala, S Kaewphan, J Björne, F Mehryary, H Moen, M Tolvanen, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (3 …, 2020
262020
Combining support vector machines and LSTM networks for chemical–protein relation extraction
F Mehryary, J Björne, T Salakoski, F Ginter
Proceedings of the BioCreative VI Workshop 1, 176-80, 2017
152017
End-to-end system for bacteria habitat extraction
F Mehryary, K Hakala, S Kaewphan, J Björne, T Salakoski, F Ginter
BioNLP 2017, 80-90, 2017
142017
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction
F Mehryary, J Björne, T Salakoski, F Ginter
Database 2018, bay120, 2018
132018
TurkuNLP entry for interactive Bio-ID assignment
S Kaewphan, F Mehryary, K Hakala, T Salakoski, F Ginter
Proceedings of the BioCreative VI Workshop, 32-35, 2017
62017
Entity-Pair Embeddings for Improving Relation Extraction in the Biomedical Domain.
F Mehryary, H Moen, T Salakoski, F Ginter
ESANN, 613-618, 2020
32020
DrugProt shared task (BioCreative VII track 1-2021) text mining drug-protein/gene interactions (DrugProt) shared task
M Krallinger, A Miranda, F Mehryary, J Luoma, S Pyysalo, A Valencia
22020
Detecting mentions of pain and acute confusion in Finnish clinical text
H Moen, K Hakala, F Mehryary, LM Peltonen, T Salakoski, F Ginter, ...
BioNLP 2017, 365-372, 2017
22017
Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification
F Mehryary, S Kaewphan, K Hakala, F Ginter
Journal of Biomedical Semantics 7, 1-13, 2016
22016
Hypothesis generation in large-scale event networks
K Hakala, F Mehryary, S Kaewphan, F Ginter, F Rinaldi, K Jin-Dong
Proceedings of the 5th International Symposium on Languages in Biology and …, 2013
22013
STRING-ing together protein complexes: extracting physical protein interactions from the literature
F Mehryary, K Nastou, T Ohta, LJ Jensen, S Pyysalo
bioRxiv, 2023.12. 10.570999, 2023
12023
Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations
A Miranda-Escalada, F Mehryary, J Luoma, D Estrada-Zavala, L Gasco, ...
Database 2023, baad080, 2023
12023
Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter.
K Hakala, F Mehryary, H Moen, S Kaewphan, T Salakoski, F Ginter
SMM4H@ AMIA, 59-63, 2017
12017
The system can't perform the operation now. Try again later.
Articles 1–20