Siobain Duffy
Siobain Duffy
Professor, Dept Ecology, Evolution and Natural Resources, Rutgers University
Verified email at - Homepage
Cited by
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Rates of evolutionary change in viruses: patterns and determinants
S Duffy, LA Shackelton, EC Holmes
Nature Reviews Genetics 9 (4), 267-276, 2008
Why are RNA virus mutation rates so damn high?
S Duffy
PLoS biology 16 (8), e3000003, 2018
Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus
S Duffy, EC Holmes
Journal of virology 82 (2), 957-965, 2008
A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics
K Rosario, S Duffy, M Breitbart
Archives of virology 157 (10), 1851-1871, 2012
Single-cell genomics reveals organismal interactions in uncultivated marine protists
HS Yoon, DC Price, R Stepanauskas, VD Rajah, ME Sieracki, WH Wilson, ...
Science 332 (6030), 714-717, 2011
Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2
C Firth, MA Charleston, S Duffy, B Shapiro, EC Holmes
Journal of virology 83 (24), 12813-12821, 2009
Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses
S Duffy, EC Holmes
Journal of general virology 90 (6), 1539-1547, 2009
Pleiotropic costs of niche expansion in the RNA bacteriophage Φ6
S Duffy, PE Turner, CL Burch
Genetics 172 (2), 751-757, 2006
Diverse circovirus-like genome architectures revealed by environmental metagenomics
K Rosario, S Duffy, M Breitbart
Journal of General Virology 90 (10), 2418-2424, 2009
Eukaryotic Circular Rep-Encoding Single-Stranded DNA (CRESS DNA) Viruses: Ubiquitous Viruses With Small Genomes and a Diverse Host Range.
L Zhao, K Rosario, M Breitbart, S Duffy
Advances in virus research 103, 71-133, 2019
Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
EM Adriaenssens, MB Sullivan, P Knezevic, LJ van Zyl, BL Sarkar, ...
Archives of virology 165 (5), 1253-1260, 2020
Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
EM Adriaenssens, J Wittmann, JH Kuhn, D Turner, MB Sullivan, BE Dutilh, ...
Archives of virology 163 (4), 1125-1129, 2018
Exploring the diversity of plant DNA viruses and their satellites using vector-enabled metagenomics on whiteflies
TFF Ng, S Duffy, JE Polston, E Bixby, GE Vallad, M Breitbart
PLoS One 6 (4), e19050, 2011
Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts
ATM Lima, RR Sobrinho, J Gonzalez-Aguilera, CS Rocha, SJC Silva, ...
Journal of General Virology 94 (2), 418-431, 2013
Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee
M Krupovic, BE Dutilh, EM Adriaenssens, J Wittmann, FK Vogensen, ...
Archives of virology 161 (4), 1095-1099, 2016
Evolution of host specificity drives reproductive isolation among RNA viruses
S Duffy, CL Burch, PE Turner
Evolution 61 (11), 2614-2622, 2007
Modeling yeast spoilage in cold-filled ready-to-drink beverages with Saccharomyces cerevisiae, Zygosaccharomyces bailii, and Candida lipolytica
AS Battey, S Duffy, DW Schaffner
Applied and environmental microbiology 68 (4), 1901-1906, 2002
Advances in plant virus evolution: translating evolutionary insights into better disease management
R Acosta-Leal, S Duffy, Z Xiong, RW Hammond, SF Elena
Phytopathology 101 (10), 1136-1148, 2011
Site-Specific, Enzymatic Biotinylation of Recombinant Proteins in< i> Spodoptera frugiperda</i> Cells Using Biotin Acceptor Peptides
S Duffy, KL Tsao, DS Waugh
Analytical biochemistry 262 (2), 122-128, 1998
The diversification of begomovirus populations is predominantly driven by mutational dynamics
ATM Lima, JCF Silva, FN Silva, GP Castillo-Urquiza, FF Silva, YM Seah, ...
Virus Evolution 3 (1), vex005, 2017
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