| Bakta: rapid & standardized annotation of bacterial genomes via alignment-free sequence identification O Schwengers, L Jelonek, M Dieckmann, S Beyvers, J Blom, ... bioRxiv, 2021 | 262 | 2021 |
| Detection and Characterization of ESBL-Producing Escherichia coli From Humans and Poultry in Ghana L Falgenhauer, C Imirzalioglu, K Oppong, CW Akenten, B Hogan, ... Frontiers in microbiology 9, 3358, 2019 | 139 | 2019 |
| Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores O Schwengers, P Barth, L Falgenhauer, T Hain, T Chakraborty, ... Microbial genomics 6 (10), e000398, 2020 | 126 | 2020 |
| ReadXplorer 2—detailed read mapping analysis and visualization from one single source R Hilker, KB Stadermann, O Schwengers, E Anisiforov, S Jaenicke, ... Bioinformatics 32 (24), 3702-3708, 2016 | 82 | 2016 |
| Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning Y Ren, T Chakraborty, S Doijad, L Falgenhauer, J Falgenhauer, ... Bioinformatics 38 (2), 325-334, 2022 | 66 | 2022 |
| ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher level analysis of closely related bacterial isolates O Schwengers, A Hoek, M Fritzenwanker, L Falgenhauer, T Hain, ... PLOS Computational Biology 16 (3), e1007134, 2020 | 62 | 2020 |
| Multidrug-resistant and clinically relevant Gram-negative bacteria are present in German surface waters L Falgenhauer, O Schwengers, J Schmiedel, C Baars, O Lambrecht, ... Frontiers in microbiology 10, 2779, 2019 | 50 | 2019 |
| The Regulatory Small RNA MarS Supports Virulence of Streptococcus pyogenes R Pappesch, P Warnke, S Mikkat, J Normann, A Wisniewska-Kucper, ... Scientific Reports 7 (1), 12241, 2017 | 39 | 2017 |
| A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies J Yu, J Blom, SP Glaeser, S Jaenicke, T Juhre, O Rupp, O Schwengers, ... Journal of biotechnology 261, 2-9, 2017 | 34 | 2017 |
| ReferenceSeeker: rapid determination of appropriate reference genomes O Schwengers, T Hain, T Chakraborty, A Goesmann Journal of Open Source Software 5 (46), 1994, 2020 | 21 | 2020 |
| Multi-label classification for multi-drug resistance prediction of Escherichia coli Y Ren, T Chakraborty, S Doijad, L Falgenhauer, J Falgenhauer, ... Computational and Structural Biotechnology Journal 20, 1264-1270, 2022 | 16 | 2022 |
| Bordetella pseudohinzii targets cilia and impairs tracheal cilia-driven transport in naturally acquired infection in mice A Perniss, N Schmidt, C Gurtner, K Dietert, O Schwengers, M Weigel, ... Scientific Reports 8 (1), 5681, 2018 | 15 | 2018 |
| Detection of blaCTX-M-27-encoding Escherichia coli ST206 in Nigerian poultry stocks FA Ayeni, J Falgenhauer, J Schmiedel, O Schwengers, T Chakraborty, ... Journal of Antimicrobial Chemotherapy 75 (10), 3070-3072, 2020 | 10 | 2020 |
| Whole-genome sequences of clinical Enterobacter bugandensis isolates from Germany J Falgenhauer, C Imirzalioglu, L Falgenhauer, Y Yao, AM Hauri, B Erath, ... Microbiology Resource Announcements 8 (29), 10.1128/mra. 00465-19, 2019 | 9 | 2019 |
| Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions D Pulami, T Schauss, T Eisenberg, J Blom, O Schwengers, JK Bender, ... Antonie Van Leeuwenhoek 114, 235-251, 2021 | 8 | 2021 |
| Split k-mer analysis compared to cgMLST and SNP-based core genome analysis for detecting transmission of vancomycin-resistant enterococci: results from routine outbreak … F Maechler, A Weber, O Schwengers, F Schwab, L Denkel, M Behnke, ... Microbial Genomics 9 (1), 000937, 2023 | 7 | 2023 |
| Deep transfer learning enables robust prediction of antimicrobial resistance for novel antibiotics Y Ren, T Chakraborty, S Doijad, L Falgenhauer, J Falgenhauer, ... Antibiotics 11 (11), 1611, 2022 | 6 | 2022 |
| Antidiabetic profiling of veramycins, polyketides accessible by biosynthesis, chemical synthesis and precursor-directed modification D Dardić, N Böhringer, A Plaza, F Zubeil, J Pohl, S Sommer, L Padva, ... Organic Chemistry Frontiers 9 (6), 1604-1615, 2022 | 5 | 2022 |
| Hospital sanitary facilities on wards with high antibiotic exposure play an important role in maintaining a reservoir of resistant pathogens, even over many years C Neidhöfer, E Sib, M Neuenhoff, O Schwengers, T Dummin, C Buechler, ... Antimicrobial Resistance & Infection Control 12 (1), 33, 2023 | 4 | 2023 |
| Phenotypic and genomic assessment of the potential threat of human spaceflight-relevant Staphylococcus capitis isolates under stress conditions K Siems, K Runzheimer, A Rehm, O Schwengers, D Heidler von Heilborn, ... Frontiers in Microbiology 13, 1007143, 2022 | 2 | 2022 |
Alexander GoesmannProfessor für Bioinformatik und Systembiologie, Justus-Liebig-Universität GiessenOverená e-mailová adresa na: cebitec.uni-bielefeld.de
