| Basin Hopping Graph: a computational framework to characterize RNA folding landscapes M Kucharik, IL Hofacker, PF Stadler, J Qin Bioinformatics 30 (14), 2009-2017, 2014 | 53 | 2014 |
| Non-invasive prenatal testing (NIPT) by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions M Kucharik, A Gnip, M Hyblova, J Budis, L Strieskova, M Harsanyova, ... PLoS One 15 (8), e0238245, 2020 | 35* | 2020 |
| Pseudoknots in RNA folding landscapes M Kucharík, IL Hofacker, PF Stadler, J Qin Bioinformatics 32 (2), 187-194, 2016 | 34 | 2016 |
| Identification of structural variation from NGS-based non-invasive prenatal testing O Pös, J Budis, Z Kubiritova, M Kucharik, F Duris, J Radvanszky, ... International journal of molecular sciences 20 (18), 4403, 2019 | 24 | 2019 |
| The microbiomes of a XVIII century mummy from the castle of Krásna Hôrka (Slovakia) and its surrounding environment L Kraková, K Šoltys, A Puškárová, M Bučková, L Jeszeová, M Kucharík, ... Environmental microbiology 20 (9), 3294-3308, 2018 | 20 | 2018 |
| Dante: genotyping of known complex and expanded short tandem repeats J Budiš, M Kucharík, F Ďuriš, J Gazdarica, M Zrubcová, A Ficek, T Szemes, ... Bioinformatics 35 (8), 1310-1317, 2019 | 16 | 2019 |
| Combining count- and length-based z-scores leads to improved predictions in non-invasive prenatal testing J Budis, J Gazdarica, J Radvanszky, G Szucs, M Kucharik, L Strieskova, ... Bioinformatics 35 (8), 1284-1291, 2019 | 15 | 2019 |
| Validation of copy number variants detection from pregnant plasma using low-pass whole-genome sequencing in noninvasive prenatal testing-like settings M Hyblova, M Harsanyova, D Nikulenkov-Grochova, J Kadlecova, ... Diagnostics 10 (8), 569, 2020 | 13 | 2020 |
| Memory-efficient RNA energy landscape exploration M Mann, M Kucharík, C Flamm, MT Wolfinger Bioinformatics 30 (18), 2584-2591, 2014 | 13 | 2014 |
| Combination of fetal fraction estimators based on fragment lengths and fragment counts in non-invasive prenatal testing J Gazdarica, R Hekel, J Budis, M Kucharik, F Duris, J Radvanszky, ... International Journal of Molecular Sciences 20 (16), 3959, 2019 | 11 | 2019 |
| Result of Prospective Validation of the Trisomy Test® for the Detection of Chromosomal Trisomies M Sekelska, A Izsakova, K Kubosova, P Tilandyova, E Csekes, Z Kuchova, ... Diagnostics 9 (4), 138, 2019 | 9 | 2019 |
| Automated prediction of the clinical impact of structural copy number variations M Gažiová, T Sládeček, O Pös, M Števko, W Krampl, Z Pös, R Hekel, ... Scientific Reports 12 (1), 555, 2022 | 7 | 2022 |
| Copy number variant detection with low-coverage whole-genome sequencing represents a viable alternative to the conventional array-CGH M Kucharík, J Budiš, M Hýblová, G Minárik, T Szemes Diagnostics 11 (4), 708, 2021 | 7 | 2021 |
| Privacy-preserving storage of sequenced genomic data R Hekel, J Budis, M Kucharik, J Radvanszky, Z Pös, T Szemes BMC genomics 22, 1-13, 2021 | 3 | 2021 |
| SnakeLines: integrated set of computational pipelines for sequencing reads J Budiš, W Krampl, M Kucharík, R Hekel, A Goga, J Sitarčík, M Lichvár, ... Journal of Integrative Bioinformatics 20 (3), 20220059, 2024 | 2 | 2024 |
| Non-intuitive trends of fetal fraction development related to gestational age and fetal gender, and their practical implications for non-invasive prenatal testing N Forgacova, J Gazdarica, J Budis, M Kucharik, M Sekelska, T Szemes Molecular and Cellular Probes 66, 101870, 2022 | 2 | 2022 |
| Combination of expert guidelines-based and machine learning-based approaches leads to superior accuracy of automated prediction of clinical effect of copy number variations T Sládeček, M Gažiová, M Kucharík, A Zaťková, Z Pös, O Pös, W Krampl, ... Scientific Reports 13 (1), 10531, 2023 | 1 | 2023 |
| Maternal Copy Number Imbalances in Non-Invasive Prenatal Testing: Do They Matter? M Hyblova, A Gnip, M Kucharik, J Budis, M Sekelska, G Minarik Diagnostics 12 (12), 3056, 2022 | 1 | 2022 |
| Detection and validation of subchromosomal aberrations detected as additional findings in routine noninvasive prenatal testing for common trisomies M Sekelská, A Izsáková, K Kubošová, P Tilandyová, E Csekes, Ž Kúchová, ... časopis laboratórnej medicíny 2019, 69, 2019 | 1 | 2019 |
| Innovative method for reducing uninformative calls in non-invasive prenatal testing J Budis, J Gazdarica, J Radvanszky, G Szucs, M Kucharik, L Strieskova, ... arXiv preprint arXiv:1806.08552, 2018 | 1 | 2018 |
Jaroslav BudišComenius University in BratislavaOverená e-mailová adresa na: uniba.sk
