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Maria Kochugaeva
Maria Kochugaeva
postdoctoral associate, Yale University
Verified email at yale.edu
Title
Cited by
Cited by
Year
Mechanisms of protein search for targets on DNA: theoretical insights
AA Shvets, MP Kochugaeva, AB Kolomeisky
Molecules 23 (9), 2106, 2018
412018
Application of molecular modeling to development of new factor Xa inhibitors
VB Sulimov, IV Gribkova, MP Kochugaeva, EV Katkova, AV Sulimov, ...
BioMed Research International 2015, 2015
352015
Role of static and dynamic obstacles in the protein search for targets on DNA
A Shvets, M Kochugaeva, AB Kolomeisky
The Journal of Physical Chemistry B 120 (26), 5802-5809, 2016
282016
Protein search for multiple targets on DNA
M Lange, M Kochugaeva, AB Kolomeisky
The Journal of chemical physics 143 (10), 2015
282015
Dynamics of the protein search for targets on DNA in the presence of traps
M Lange, M Kochugaeva, AB Kolomeisky
The Journal of Physical Chemistry B 119 (38), 12410-12416, 2015
252015
How conformational dynamics influences the protein search for targets on DNA
MP Kochugaeva, AA Shvets, AB Kolomeisky
Journal of Physics A: Mathematical and Theoretical 49 (44), 444004, 2016
222016
Elucidating the correlations between cancer initiation times and lifetime cancer risks
H Teimouri, MP Kochugaeva, AB Kolomeisky
Scientific reports 9 (1), 18940, 2019
142019
Optimal length of conformational transition region in protein search for targets on DNA
MP Kochugaeva, AM Berezhkovskii, AB Kolomeisky
The journal of physical chemistry letters 8 (17), 4049-4054, 2017
132017
On the mechanism of homology search by RecA protein filaments
MP Kochugaeva, AA Shvets, AB Kolomeisky
Biophysical Journal 112 (5), 859-867, 2017
132017
PCM, COSMO and Surface GB implementation in program DISOLV: Development and validation
VB Sulimov, EV Katkova, IV Oferkin, MP Kochugaeva
244th ACS National Meeting, Philadelphia, Pennsylvania, USA, 2012
42012
SARS-CoV-2 leverages airway epithelial protective mechanism for viral infection
AM Greaney, MSB Raredon, MP Kochugaeva, LE Niklason, A Levchenko
Iscience 26 (3), 2023
22023
Kinetics of Protein–DNA Interactions: First-Passage Analysis
MP Kochugaeva, AA Shvets, AB Kolomeisky
Chemical Kinetics: Beyond the Textbook, 473-492, 2020
2020
When will the cancer start? Elucidating the correlations between cancer initiation times and lifetime cancer risks
H Teimouri, M Kochugaeva, AB Kolomeisky
bioRxiv, 640284, 2019
2019
Theoretical investigation of RecA filaments search for DNA breaks
M Kochugaeva, A Shvets, A Kolomeisky
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 253, 2017
2017
How Conformational Dynamics Influences the Protein Search for Targets on DNA
MP Kochugaeva, AA Shvets, AB Kolomeisky
Biophysical Journal 112 (3), 314a, 2017
2017
Theoretical Investigation of Protein Search for Targets on DNA
MP Kochugaeva
Rice University, 2017
2017
Protein Search for Multiple Targets on DNA
M Kochugaeva, M Lange, A Kolomeisky
Biophysical Journal 110 (3), 236a, 2016
2016
Research Article Application of Molecular Modeling to Development of New Factor Xa Inhibitors
VB Sulimov, IV Gribkova, MP Kochugaeva, EV Katkova, AV Sulimov, ...
2015
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