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Antoine Limasset
Antoine Limasset
CNRS, Université de Lille, Laboratoire CRIStAL, Equipe Bonsai
Verified email at univ-lille.fr - Homepage
Title
Cited by
Cited by
Year
Compacting de Bruijn graphs from sequencing data quickly and in low memory
R Chikhi, A Limasset, P Medvedev
Bioinformatics 32 (12), i201-i208, 2016
2262016
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
2112022
On the representation of de Bruijn graphs
R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev
Research in Computational Molecular Biology: 18th Annual International …, 2014
1952014
Read mapping on de Bruijn graphs
A Limasset, B Cazaux, E Rivals, P Peterlongo
BMC bioinformatics 17, 1-12, 2016
1022016
Fast and scalable minimal perfect hashing for massive key sets
A Limasset, G Rizk, R Chikhi, P Peterlongo
16th International Symposium on Experimental Algorithms, 2017
972017
STRONG: metagenomics strain resolution on assembly graphs
C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ...
Genome biology 22, 1-34, 2021
872021
Scalable long read self-correction and assembly polishing with multiple sequence alignment
P Morisse, C Marchet, A Limasset, T Lecroq, A Lefebvre
Scientific reports 11 (1), 761, 2021
56*2021
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
P Simion, J Narayan, A Houtain, A Derzelle, L Baudry, E Nicolas, R Arora, ...
Science Advances 7 (41), eabg4216, 2021
47*2021
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
A Limasset, JF Flot, P Peterlongo
Bioinformatics 36 (5), 1374-1381, 2020
452020
BLight: Efficient exact associative structure for k-mers
C Marchet, M Kerbiriou, A Limasset
Bioinformatics, 2021
41*2021
A resource-frugal probabilistic dictionary and applications in bioinformatics
C Marchet, L Lecompte, A Limasset, L Bittner, P Peterlongo
Discrete Applied Mathematics 274, 92-102, 2020
30*2020
Scalable sequence database search using partitioned aggregated Bloom comb trees
C Marchet, A Limasset
Bioinformatics 39 (Supplement_1), i252-i259, 2023
142023
ELECTOR: evaluator for long reads correction methods
C Marchet, P Morisse, L Lecompte, A Lefebvre, T Lecroq, P Peterlongo, ...
NAR Genomics and Bioinformatics 2 (1), lqz015, 2020
132020
Locality-preserving minimal perfect hashing of k-mers
GE Pibiri, Y Shibuya, A Limasset
Bioinformatics 39 (Supplement_1), i534-i543, 2023
102023
Novel approaches for the exploitation of high throughput sequencing data
A Limasset
Université Rennes 1, 2017
6*2017
Conway–Bromage–Lyndon (CBL): an exact, dynamic representation of k-mer sets
I Martayan, B Cazaux, A Limasset, C Marchet
Bioinformatics 40 (Supplement_1), i48-i57, 2024
32024
Fractional hitting sets for efficient and lightweight genomic data sketching
T Rouzé, I Martayan, C Marchet, A Limasset
bioRxiv, 2023.06. 21.545875, 2023
22023
Toward optimal fingerprint indexing for large scale genomics
C Agret, B Cazaux, A Limasset
bioRxiv, 2021.11. 04.467355, 2021
22021
Million sequences indexing
A Limasset
BMC BIOINFORMATICS 20, 2019
12019
Assembly improvements by read mapping and phasing
A Limasset
Ph. D. dissertation, IRISA, Inria Rennes, 2014
12014
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