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Daria Gaykalova
Daria Gaykalova
Associate Professor of Otorhinolaryngology - Head and Neck Surgery, University of Maryland
Verified email at som.umaryland.edu - Homepage
Title
Cited by
Cited by
Year
Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II
VA Bondarenko, LM Steele, A Újvári, DA Gaykalova, OI Kulaeva, ...
Molecular cell 24 (3), 469-479, 2006
3142006
Activation of the NOTCH Pathway in Head and Neck Cancer
W Sun, DA Gaykalova, MF Ochs, E Mambo, D Arnaoutakis, Y Liu, M Loyo, ...
Cancer research 74 (4), 1091-1104, 2014
2702014
Using DNA mechanics to predict in vitro nucleosome positions and formation energies
AV Morozov, K Fortney, DA Gaykalova, VM Studitsky, J Widom, ED Siggia
Nucleic acids research 37 (14), 4707-4722, 2009
2242009
Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II
OI Kulaeva, DA Gaykalova, NA Pestov, VV Golovastov, DG Vassylyev, ...
Nature structural & molecular biology 16 (12), 1272-1278, 2009
2082009
Transcription through chromatin by RNA polymerase II: histone displacement and exchange
OI Kulaeva, DA Gaykalova, VM Studitsky
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 618 (1 …, 2007
1242007
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ...
Briefings in functional genomics 17 (1), 49-63, 2018
1222018
Novel insight into mutational landscape of head and neck squamous cell carcinoma
DA Gaykalova, E Mambo, A Choudhary, J Houghton, K Buddavarapu, ...
PloS one 9 (3), e93102, 2014
1012014
Structural analysis of nucleosomal barrier to transcription
DA Gaykalova, OI Kulaeva, O Volokh, AK Shaytan, FK Hsieh, ...
Proceedings of the National Academy of Sciences 112 (43), E5787-E5795, 2015
842015
Molecular mechanisms of human papillomavirus-related carcinogenesis in head and neck cancer
F Faraji, M Zaidi, C Fakhry, DA Gaykalova
Microbes and infection 19 (9-10), 464-475, 2017
822017
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers
M Ando, Y Saito, G Xu, NQ Bui, K Medetgul-Ernar, M Pu, K Fisch, S Ren, ...
Nature communications 10 (1), 2188, 2019
802019
Preparation and analysis of uniquely positioned mononucleosomes
DA Gaykalova, OI Kulaeva, VA Bondarenko, VM Studitsky
Chromatin Protocols: Second Edition, 109-123, 2009
712009
BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer
S Bhan, SS Negi, C Shao, CA Glazer, A Chuang, DA Gaykalova, W Sun, ...
Clinical cancer research 17 (13), 4267-4276, 2011
692011
HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers
S Ren, DA Gaykalova, T Guo, AV Favorov, EJ Fertig, P Tamayo, ...
Oncogene 39 (40), 6327-6339, 2020
682020
Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks
DZ Kelley, EL Flam, E Izumchenko, LV Danilova, HA Wulf, T Guo, ...
Cancer research 77 (23), 6538-6550, 2017
582017
NF‐κB and stat3 transcription factor signatures differentiate HPV‐positive and HPV‐negative head and neck squamous cell carcinoma
DA Gaykalova, JB Manola, H Ozawa, V Zizkova, K Morton, JA Bishop, ...
International journal of cancer 137 (8), 1879-1889, 2015
572015
PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF
GL Stein-O’Brien, JL Carey, WS Lee, M Considine, AV Favorov, E Flam, ...
Bioinformatics 33 (12), 1892-1894, 2017
512017
Serum antibodies to HPV16 early proteins warrant investigation as potential biomarkers for risk stratification and recurrence of HPV-associated oropharyngeal cancer
C Fakhry, JR Qualliotine, Z Zhang, N Agrawal, DA Gaykalova, JA Bishop, ...
Cancer Prevention Research 9 (2), 135-141, 2016
49*2016
Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma
T Guo, DA Gaykalova, M Considine, S Wheelan, A Pallavajjala, JA Bishop, ...
International journal of cancer 139 (2), 373-382, 2016
482016
Suprabasin is hypomethylated and associated with metastasis in salivary adenoid cystic carcinoma
C Shao, M Tan, JA Bishop, J Liu, W Bai, DA Gaykalova, T Ogawa, ...
PloS one 7 (11), e48582, 2012
472012
Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell …
LT Kagohara, F Zamuner, EF Davis-Marcisak, G Sharma, M Considine, ...
British journal of cancer 123 (1), 101-113, 2020
462020
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