Xie Chao
Xie Chao
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Fast and sensitive protein alignment using DIAMOND
B Buchfink, C Xie, DH Huson
Nature methods 12 (1), 59-60, 2015
CNV-seq, a new method to detect copy number variation using high-throughput sequencing
C Xie, MT Tammi
BMC bioinformatics 10, 1-9, 2009
Deep sequencing of 10,000 human genomes
A Telenti, LCT Pierce, WH Biggs, J Di Iulio, EHM Wong, MM Fabani, ...
Proceedings of the National Academy of Sciences 113 (42), 11901-11906, 2016
The role of quorum sensing signalling in EPS production and the assembly of a sludge community into aerobic granules
CH Tan, KS Koh, C Xie, M Tay, Y Zhou, R Williams, WJ Ng, SA Rice, ...
The ISME journal 8 (6), 1186-1197, 2014
Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm
KWK Lee, S Periasamy, M Mukherjee, C Xie, S Kjelleberg, SA Rice
The ISME journal 8 (4), 894-907, 2014
The blood DNA virome in 8,000 humans
A Moustafa, C Xie, E Kirkness, W Biggs, E Wong, Y Turpaz, K Bloom, ...
PLoS pathogens 13 (3), e1006292, 2017
Identification of individuals by trait prediction using whole-genome sequencing data
C Lippert, R Sabatini, MC Maher, EY Kang, S Lee, O Arikan, A Harley, ...
Proceedings of the National Academy of Sciences 114 (38), 10166-10171, 2017
Community quorum sensing signalling and quenching: microbial granular biofilm assembly
CH Tan, KS Koh, C Xie, J Zhang, XH Tan, GP Lee, Y Zhou, WJ Ng, ...
npj Biofilms and Microbiomes 1 (1), 1-9, 2015
Fast and accurate HLA typing from short-read next-generation sequence data with xHLA
C Xie, ZX Yeo, M Wong, J Piper, T Long, EF Kirkness, WH Biggs, K Bloom, ...
Proceedings of the National Academy of Sciences 114 (30), 8059-8064, 2017
The BpsIR Quorum-Sensing System of Burkholderia pseudomallei
Y Song, C Xie, YM Ong, YH Gan, KL Chua
Journal of bacteriology 187 (2), 785-790, 2005
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions
Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ...
Scientific Reports 6 (1), 25719, 2016
A poor man’s BLASTX—high-throughput metagenomic protein database search using PAUDA
DH Huson, C Xie
Bioinformatics 30 (1), 38-39, 2014
RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys
C Xie, CLW Goi, DH Huson, PFR Little, RBH Williams
BMC bioinformatics 17, 277-282, 2016
Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll
TC Jeffries, M Ostrowski, RB Williams, C Xie, RM Jensen, JJ Grzymski, ...
Scientific Reports 5 (1), 15383, 2015
Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads
DH Huson, R Tappu, AL Bazinet, C Xie, MP Cummings, K Nieselt, ...
Microbiome 5, 1-10, 2017
Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data
CL Goi, P Little, C Xie
BMC genomics 14, 1-11, 2013
MetaScope-Fast and accurate identification of microbes in metagenomic sequencing data
B Buchfink, DH Huson, C Xie
arXiv preprint arXiv:1511.08753, 2015
Primer-free FISH probes from metagenomics/metatranscriptomics data permit the study of uncharacterised taxa in complex microbial communities
SM Tan, PYM Yung, PE Hutchinson, C Xie, GH Teo, MH Ismail, ...
npj Biofilms and Microbiomes 5 (1), 17, 2019
Metagenomics reveals the influence of land use and rain on the benthic microbial communities in a tropical urban waterway
G Saxena, S Mitra, EM Marzinelli, C Xie, TJ Wei, PD Steinberg, ...
Msystems 3 (3), 10.1128/msystems. 00136-17, 2018
Simple re-instantiation of small databases using cloud computing
TW Tan, C Xie, M De Silva, KS Lim, CPK Patro, SJ Lim, KR Govindarajan, ...
BMC genomics 14, 1-4, 2013
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