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Qian Zhu
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Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+
CHL Eng, M Lawson, Q Zhu, R Dries, N Koulena, Y Takei, J Yun, ...
Nature 568 (7751), 235-239, 2019
12592019
Giotto, a toolbox for integrative analysis and visualization of spatial expression data
R Dries*, Q Zhu*, R Dong, CHL Eng, H Li, K Liu, Y Fu, T Zhao, A Sarkar, ...
Genome biology, 2021
4602021
Direct promoter repression by BCL11A controls the fetal to adult hemoglobin switch
N Liu*, VV Hargreaves*, Q Zhu*, JV Kurland, J Hong, W Kim, F Sher, ...
Cell 173 (2), 430-442. e17, 2018
3842018
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ...
Nature 574 (7777), 187-192, 2019
3692019
Defining cell-type specificity at the transcriptional level in human disease
W Ju, CS Greene, F Eichinger, V Nair, JB Hodgin, M Bitzer, Y Lee, Q Zhu, ...
Genome research 23 (11), 1862-1873, 2013
2322013
Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data
Q Zhu, S Shah, R Dries, L Cai, GC Yuan
Nature biotechnology 36 (12), 1183-1190, 2018
2102018
Revealing the critical regulators of cell identity in the mouse cell atlas
S Suo, Q Zhu, A Saadatpour, L Fei, G Guo, GC Yuan
Cell reports 25 (6), 1436-1445. e3, 2018
1862018
IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment
C Nirschl, M Suraez-Farinas, B Izar, S Prakadan, R Dannenfelser, I Tirosh, ...
Cell 170 (1), 127-141, 2017
1492017
Accurate estimation of cell-type composition from gene expression data
D Tsoucas, R Dong, H Chen, Q Zhu, G Guo, GC Yuan
Nature communications 10 (1), 2975, 2019
1472019
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ...
Nature methods 12 (3), 211-214, 2015
1412015
The collapse of gene complement following whole genome duplication
D Sankoff, C Zheng, Q Zhu
BMC genomics 11, 1-11, 2010
1242010
CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis
Q Zhu, N Liu, SH Orkin, GC Yuan
Genome Biology 20, 192, 2019
1162019
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
MR Aure, SK Leivonen, T Fleischer, Q Zhu, J Overgaard, J Alsner, ...
Genome biology 14, 1-20, 2013
1102013
Transcription factor competition at the γ-globin promoters controls hemoglobin switching
N Liu, S Xu, Q Yao, Q Zhu, Y Kai, JY Hsu, P Sakon, L Pinello, GC Yuan, ...
Nature genetics 53 (4), 511-520, 2021
662021
Scaffold filling, contig fusion and comparative gene order inference
A Muñoz, C Zheng, Q Zhu, VA Albert, S Rounsley, D Sankoff
BMC bioinformatics 11, 1-15, 2010
622010
Algorithms for the extraction of synteny blocks from comparative maps
V Choi, C Zheng, Q Zhu, D Sankoff
Algorithms in Bioinformatics: 7th International Workshop, WABI 2007 …, 2007
542007
Removing noise and ambiguities from comparative maps in rearrangement analysis
C Zheng, Q Zhu, D Sankoff
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 515-522, 2007
512007
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes
C Zheng, Q Zhu, Z Adam, D Sankoff
Bioinformatics 24 (13), i96-i104, 2008
502008
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms
CY Park, A Krishnan, Q Zhu, AK Wong, YS Lee, OG Troyanskaya
Bioinformatics 31 (7), 1093-1101, 2015
452015
Genome halving with an outgroup
C Zheng, Q Zhu, D Sankoff
Evolutionary Bioinformatics 2, 117693430600200028, 2006
402006
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Articles 1–20