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Rahulsimham vegesna
Rahulsimham vegesna
Gritstone Bio
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Title
Cited by
Cited by
Year
Inferring tumour purity and stromal and immune cell admixture from expression data
K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ...
Nature communications 4 (1), 2612, 2013
63582013
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
cell 155 (2), 462-477, 2013
49722013
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network Analysis working group: Baylor College ...
Nature 499 (7456), 43-49, 2013
28252013
The landscape and therapeutic relevance of cancer-associated transcript fusions
K Yoshihara, Q Wang, W Torres-Garcia, S Zheng, R Vegesna, H Kim, ...
Oncogene 34 (37), 4845-4854, 2015
4692015
Inferring tumour purity and stromal and immune cell admixture from expression data. Nat Commun. 2013; 4: 2612
K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ...
3222022
Halogen interactions in protein–ligand complexes: implications of halogen bonding for rational drug design
S Sirimulla, JB Bailey, R Vegesna, M Narayan
Journal of chemical information and modeling 53 (11), 2781-2791, 2013
2732013
PRADA: pipeline for RNA sequencing data analysis
W Torres-García, S Zheng, A Sivachenko, R Vegesna, Q Wang, R Yao, ...
Bioinformatics 30 (15), 2224-2226, 2014
1722014
Inferring tumour purity and stromal and immune cell admixture from expression data. Nat Commun 4: 2612
K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ...
DOI: https://doi. org/10.1038/ncomms3612, PMID 24113773, 2013
1462013
A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival
S Zheng, J Fu, R Vegesna, Y Mao, LE Heathcock, W Torres-Garcia, ...
Genes & development 27 (13), 1462-1472, 2013
842013
Dynamic evolution of great ape Y chromosomes
M Cechova, R Vegesna, M Tomaszkiewicz, RS Harris, D Chen, ...
Proceedings of the National Academy of Sciences 117 (42), 26273-26280, 2020
292020
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes
R Vegesna, M Tomaszkiewicz, P Medvedev, KD Makova
PLoS genetics 15 (9), e1008369, 2019
232019
Correcting palindromes in long reads after whole-genome amplification
S Warris, E Schijlen, H Van De Geest, R Vegesna, T Hesselink, ...
BMC genomics 19, 1-12, 2018
232018
Ampliconic genes on the great ape Y chromosomes: rapid evolution of copy number but conservation of expression levels
R Vegesna, M Tomaszkiewicz, OA Ryder, R Campos-Sánchez, ...
Genome biology and evolution 12 (6), 842-859, 2020
152020
The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective
S Ahmadi, P Sukprasert, R Vegesna, S Sinha, F Schischlik, N Artzi, ...
Nature communications 13 (1), 1613, 2022
132022
Erratum: The somatic genomic landscape of glioblastoma (Cell (2013) 155 (462-477))
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 157 (3), 753, 2014
82014
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results
DT Yehdego, B Zhang, M Taufer, VKR Kodimala, R Vegesna, ...
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
32012
Predicting patient treatment response and resistance via single-cell transcriptomics of their tumors
S Sinha, R Vegesna, SR Dhruba, W Wu, DL Kerr, OV Stroganov, ...
bioRxiv, 2022.01. 11.475728, 2022
12022
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors
S Sinha, R Vegesna, S Mukherjee, AV Kammula, SR Dhruba, W Wu, ...
Nature Cancer, 1-15, 2024
2024
Predicting patient treatment response and resistance via single-cell transcriptomics of their tumors
E Ruppin, S Sinha, R Vegesna, A Kammula, SR Dhruba, W Wu, L Kerr, ...
2022
Single cell precision oncology: A proof of principle
S Sinha, R Vegesna, A Schaffer, E Ruppin
Cancer Research 82 (12_Supplement), 1906-1906, 2022
2022
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Articles 1–20