Simon Joly

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Anne BruneauUniversité de MontréalVerified email at umontreal.ca
Frederic PitreResearcher Montreal Botanical Garden / Adjunct Professor Universite de MontrealVerified email at umontreal.ca
Michel LabrecqueProfesseur associé, Sciences biologiques Université de MontréalVerified email at umontreal.ca
Peter lockhartMassey universityVerified email at massey.ac.nz
Emmanuel GonzalezBioinformatics, McGill UniversityVerified email at umontreal.ca
Etienne YergeauProfessor, Institut national de la recherche scientifiqueVerified email at inrs.ca
John L. ClarkMarie Selby Botanical GardensVerified email at selby.org
Daniel J. SchoenProfessor of Biology, McGill UniversityVerified email at mcgill.ca
Nicholas BreretonUniversity College DublinVerified email at ucd.ie
Werther Guidi NissimDepartment of Plant, Soil and Environmental Science - University of FlorenceVerified email at unifi.it
Peter HeenanManaaki Whenua Landcare ResearchVerified email at landcareresearch.co.nz
Martin A. LysakCEITEC - Central European Institute of Technology, Masaryk University, BrnoVerified email at ceitec.muni.cz
Martin KrzywinskiGenome Sciences Center, BC Cancer Research CenterVerified email at bcgsc.ca
Jana VamosiProfessor, University of CalgaryVerified email at ucalgary.ca
Marc St-ArnaudProfesseur associé, Université de Montréal; Chercheur associé, IRBV, MontréalVerified email at umontreal.ca
Annie ArchambaultCIELVerified email at ciel-cvp.ca
Étienne Léveillé-Bourretassistant professor - Université de MontréalVerified email at umontreal.ca
Jeremiah W. BuschWashington State UniversityVerified email at wsu.edu
Julie FaureUniversité de MontréalVerified email at umontreal.ca
Terrence BellAssistant Professor, Physical and Environmental Sciences, University of Toronto ScarboroughVerified email at utoronto.ca

Simon Joly

Researcher, Montreal Botanical Garden | Adjunct Professor, Université de Montéal

Verified email at umontreal.ca - Homepage

Evolutionary biology phylogenetics mating system evolution population genomics hybridization


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A statistical approach for distinguishing hybridization and incomplete lineage sorting S Joly, PA McLenachan, PJ Lockhart The American Naturalist 174 (2), E54-E70, 2009	440	2009
Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis T Mandakova, S Joly, M Krzywinski, K Mummenhoff, MA Lysak The Plant Cell 22 (7), 2277-2290, 2010	220	2010
Increasing phytoremediation efficiency and reliability using novel omics approaches TH Bell, S Joly, FE Pitre, E Yergeau Trends in biotechnology 32 (5), 271-280, 2014	197	2014
Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America S Joly, A Bruneau Systematic Biology 55 (4), 623-636, 2006	187	2006
Phylogenetic relationships in the genus Rosa: new evidence from chloroplast DNA sequences and an appraisal of current knowledge A Bruneau, JR Starr, S Joly Systematic Botany 32 (2), 366-378, 2007	169	2007
Phylogeny and biogeography of wild roses with specific attention to polyploids M Fougère-Danezan, S Joly, A Bruneau, XF Gao, LB Zhang Annals of Botany 115 (2), 275-291, 2015	163	2015
An approach to transcriptome analysis of non-model organisms using short-read sequences LJ Collins, P Biggs, C Voelckel, S Joly Genome Informatics 21, 3-14, 2008	161	2008
Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead S Joly, TJ Davies, A Archambault, A Bruneau, A Derry, SW Kembel, ... Molecular Ecology Resources 14 (2), 221-232, 2014	148	2014
Polyploid and hybrid evolution in roses east of the Rocky Mountains S Joly, JR Starr, WH Lewis, A Bruneau American Journal of Botany 93 (3), 412-425, 2006	141	2006
JML: testing hybridization from species trees S Joly Molecular Ecology Resources 12 (1), 179-184, 2012	124	2012
An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus) JA Lee‐Yaw, CJ Grassa, S Joly, RL Andrew, LH Rieseberg New Phytologist 221 (1), 515-526, 2019	112	2019
Demographic Signatures Accompanying the Evolution of Selfing in Leavenworthia alabamica JW Busch, S Joly, DJ Schoen Molecular Biology and Evolution 28 (5), 1717-1729, 2011	107	2011
Haplotype networks can be misleading in the presence of missing data S Joly, MI Stevens, BJ Van Vuuren Systematic biology 56 (5), 857-862, 2007	100	2007
Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination E Gonzalez, FE Pitre, AP Pagé, J Marleau, W Guidi Nissim, M St-Arnaud, ... Microbiome 6, 1-30, 2018	96	2018
A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand S Joly, PB Heenan, PJ Lockhart Molecular phylogenetics and evolution 51 (2), 365-372, 2009	82	2009
Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome E Yergeau, J Tremblay, S Joly, M Labrecque, C Maynard, FE Pitre, ... The ISME journal 12 (3), 869-884, 2018	78	2018
Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species G Albani Rocchetti, CG Armstrong, T Abeli, S Orsenigo, C Jasper, S Joly, ... New Phytologist 230 (2), 433-450, 2021	65	2021
Evolutionary dynamics and preferential expression of homeologous 18S-5.8 S-26S nuclear ribosomal genes in natural and artificial glycine allopolyploids S Joly, JT Rauscher, SL Sherman-Broyles, AHD Brown, JJ Doyle Molecular Biology and Evolution 21 (7), 1409-1421, 2004	65	2004
Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices MFS Ngo Ngwe, DN Omokolo, S Joly PLoS one 10 (12), e0145364, 2015	58	2015
Temperate forests dominated by arbuscular or ectomycorrhizal fungi are characterized by strong shifts from saprotrophic to mycorrhizal fungi with increasing soil depth A Carteron, M Beigas, S Joly, BL Turner, E Laliberté Microbial Ecology 82 (2), 377-390, 2021	52	2021

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