Charles G. Danko
Charles G. Danko
Associate Professor, Cornell University
Verified email at - Homepage
Cited by
Cited by
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis
Nature genetics 46 (12), 1311-1320, 2014
Bayesian inference of ancient human demography from individual genome sequences
I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel
Nature genetics 43 (10), 1031-1034, 2011
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus
Cell 145 (4), 622-634, 2011
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
Enhancer transcripts mark active estrogen receptor binding sites
N Hah, S Murakami, A Nagari, CG Danko, WL Kraus
Genome research 23 (8), 1210-1223, 2013
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
DB Mahat, H Kwak, GT Booth, IH Jonkers, CG Danko, RK Patel, ...
Nature protocols 11 (8), 1455-1476, 2016
Mammalian heat shock response and mechanisms underlying its genome-wide transcriptional regulation
DB Mahat, HH Salamanca, FM Duarte, CG Danko, JT Lis
Molecular cell 62 (1), 63-78, 2016
Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells
CG Danko, N Hah, X Luo, AL Martins, L Core, JT Lis, A Siepel, WL Kraus
Molecular cell 50 (2), 212-222, 2013
A unified architecture of transcriptional regulatory elements
R Andersson, A Sandelin, CG Danko
Trends in Genetics 31 (8), 426-433, 2015
Identification of active transcriptional regulatory elements from GRO-seq data
CG Danko, SL Hyland, LJ Core, AL Martins, CT Waters, HW Lee, ...
Nature methods 12 (5), 433-438, 2015
Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology
T Chu, Z Wang, D Pe’er, CG Danko
Nature Cancer 3 (4), 505-517, 2022
Transcriptional response to stress is pre-wired by promoter and enhancer architecture
A Vihervaara, DB Mahat, MJ Guertin, T Chu, CG Danko, JT Lis, L Sistonen
Nature communications 8 (1), 255, 2017
Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme
T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ...
Nature genetics 50 (11), 1553-1564, 2018
GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters
NJ Fuda, MJ Guertin, S Sharma, CG Danko, AL Martins, A Siepel, JT Lis
PLoS genetics 11 (3), e1005108, 2015
Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry
JJ Lewis, RC Geltman, PC Pollak, KE Rondem, SM Van Belleghem, ...
Proceedings of the National Academy of Sciences 116 (48), 24174-24183, 2019
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock
J Ray, PR Munn, A Vihervaara, JJ Lewis, A Ozer, CG Danko, JT Lis
Proceedings of the National Academy of Sciences 116 (39), 19431-19439, 2019
Identification of regulatory elements from nascent transcription using dREG
Z Wang, T Chu, LA Choate, CG Danko
Genome research 29 (2), 293-303, 2019
Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells
M Saikia, P Burnham, SH Keshavjee, MFZ Wang, M Heyang, ...
Nature methods 16 (1), 59-62, 2019
Prediction of histone post-translational modification patterns based on nascent transcription data
Z Wang, AG Chivu, LA Choate, EJ Rice, DC Miller, T Chu, SP Chou, ...
Nature genetics 54 (3), 295-305, 2022
Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans
L Zeng, SC Choi, CG Danko, A Siepel, MJ Stanhope, RA Burne
PloS one 8 (3), e60465, 2013
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