Olga Troyanskaya

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Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Casey S. GreeneBiomedical Informatics; Center for Health AI; University of Colorado Anschutz MedicalVerified email at cuanschutz.edu
Edoardo M AiroldiProfessor of Statistics & Data Science Temple University & PI, Harvard UniversityVerified email at fas.harvard.edu
Matt van de RijnProfessor of Pathology, Stanford UniversityVerified email at stanford.edu
Maitreya J DunhamGenome Sciences, University of WashingtonVerified email at uw.edu
Gavin SherlockProfessor of Genetics, Stanford UniversityVerified email at stanford.edu
Kai LiProfessor of computer science, Princeton universityVerified email at cs.princeton.edu
Zafer BarutcuogluPh.D. in Computer Science, Princeton UniversityVerified email at cs.princeton.edu
Robert TibshiraniProfessor of Biomedical Data Sciences, and of Statistics, Stanford UniversityVerified email at stanford.edu
Trevor HastieProfessor of Statistics, Stanford UniversityVerified email at stanford.edu
Charles M. PerouUniversity of North Carolina at Chapel HillVerified email at med.unc.edu
Florian MarkowetzCancer Research UK Cambridge InstituteVerified email at cruk.cam.ac.uk
David GreshamNew York UniversityVerified email at nyu.edu
Michael Costanzouniversity of torontoVerified email at utoronto.ca
Corey NislowProfessor, CRC Tier 1 in Translational Genomics, University of British ColumbiaVerified email at ubc.ca
Howard Y. ChangChief Scientific Officer, AmgenVerified email at stanford.edu
John MurrayAssociate Professor of Genetics, Perelman School of Medicine, University of PennsylvaniaVerified email at pennmedicine.upenn.edu
Grant W BrownUniversity of TorontoVerified email at utoronto.ca
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Jeff LeekChief Data Officer, VP, and J Orin Edson Foundation Professor, Fred Hutchinson Cancer CenterVerified email at fredhutch.org

Olga Troyanskaya

Princeton University and Flatiron Institute, Simons Foundation

Verified email at princeton.edu - Homepage

bioinformatics genomics machine learning computational biology


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Missing value estimation methods for DNA microarrays O Troyanskaya, M Cantor, G Sherlock, P Brown, T Hastie, R Tibshirani, ... Bioinformatics 17 (6), 520-525, 2001	4960	2001
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2556	2010
Predicting effects of noncoding variants with deep learning–based sequence model J Zhou, OG Troyanskaya Nature methods 12 (10), 931-934, 2015	2416	2015
Diversity of gene expression in adenocarcinoma of the lung ME Garber, OG Troyanskaya, K Schluens, S Petersen, Z Thaesler, ... Proceedings of the National Academy of Sciences 98 (24), 13784-13789, 2001	1679	2001
A global genetic interaction network maps a wiring diagram of cellular function M Costanzo, B VanderSluis, EN Koch, A Baryshnikova, C Pons, G Tan, ... Science 353 (6306), aaf1420, 2016	1345	2016
Endothelial cell diversity revealed by global expression profiling JT Chi, HY Chang, G Haraldsen, FL Jahnsen, OG Troyanskaya, ... Proceedings of the National Academy of Sciences 100 (19), 10623-10628, 2003	960	2003
Understanding multicellular function and disease with human tissue-specific networks CS Greene, A Krishnan, AK Wong, E Ricciotti, RA Zelaya, ... Nature genetics 47 (6), 569-576, 2015	925	2015
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein Proceedings of the National Academy of Sciences 100 (14), 8348-8353, 2003	804	2003
Hierarchical multi-label prediction of gene function Z Barutcuoglu, RE Schapire, OG Troyanskaya Bioinformatics 22 (7), 830-836, 2006	712	2006
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry A Chi, C Huttenhower, LY Geer, JJ Coon, JEP Syka, DL Bai, ... Proceedings of the National Academy of Sciences 104 (7), 2193-2198, 2007	699	2007
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast MJ Brauer, C Huttenhower, EM Airoldi, R Rosenstein, JC Matese, ... Molecular biology of the cell 19 (1), 352-367, 2008	676	2008
Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk J Zhou, CL Theesfeld, K Yao, KM Chen, AK Wong, OG Troyanskaya Nature genetics 50 (8), 1171-1179, 2018	588	2018
Systemic and cell type-specific gene expression patterns in scleroderma skin ML Whitfield, DR Finlay, JI Murray, OG Troyanskaya, JT Chi, ... Proceedings of the National Academy of Sciences 100 (21), 12319-12324, 2003	520	2003
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder A Krishnan, R Zhang, V Yao, CL Theesfeld, AK Wong, A Tadych, ... Nature neuroscience 19 (11), 1454-1462, 2016	458	2016
Gene expression patterns in ovarian carcinomas ME Schaner, DT Ross, G Ciaravino, T Sørlie, O Troyanskaya, M Diehn, ... Molecular biology of the cell 14 (11), 4376-4386, 2003	450	2003
Nonparametric methods for identifying differentially expressed genes in microarray data OG Troyanskaya, ME Garber, PO Brown, D Botstein, RB Altman Bioinformatics 18 (11), 1454-1461, 2002	448	2002
New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries N Shrine, AL Guyatt, AM Erzurumluoglu, VE Jackson, BD Hobbs, ... Nature genetics 51 (3), 481-493, 2019	447	2019
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale A Baryshnikova, M Costanzo, Y Kim, H Ding, J Koh, K Toufighi, JY Youn, ... Nature methods 7 (12), 1017-1024, 2010	439	2010
Variation in gene expression patterns in human gastric cancers X Chen, SY Leung, ST Yuen, KM Chu, J Ji, R Li, ASY Chan, S Law, ... Molecular biology of the cell 14 (8), 3208-3215, 2003	374	2003
SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma JH Choe, PB Watchmaker, MS Simic, RD Gilbert, AW Li, NA Krasnow, ... Science translational medicine 13 (591), eabe7378, 2021	360	2021

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