Zachary Fox
Zachary Fox
Research Scientist for AI in Health
Verified email at - Homepage
Cited by
Cited by
Integrating single-molecule experiments and discrete stochastic models to understand heterogeneous gene transcription dynamics
B Munsky, Z Fox, G Neuert
Methods 85, 12-21, 2015
Distribution shapes govern the discovery of predictive models for gene regulation
B Munsky, G Li, ZR Fox, DP Shepherd, G Neuert
Proceedings of the National Academy of Sciences 115 (29), 7533-7538, 2018
Nonspecific transcription factor binding can reduce noise in the expression of downstream proteins
M Soltani, P Bokes, Z Fox, A Singh
Physical biology 12 (5), 055002, 2015
Finite state projection based bounds to compare chemical master equation models using single-cell data
Z Fox, G Neuert, B Munsky
Journal of Chemical Physics 145, 2016
The finite state projection based Fisher information matrix approach to estimate information and optimize single-cell experiments
ZR Fox, B Munsky
PLoS computational biology 15 (1), e1006365, 2019
Aging power spectrum of membrane protein transport and other subordinated random walks
ZR Fox, E Barkai, D Krapf
Nature communications 12 (1), 1-9, 2021
Disorder, oscillatory dynamics and state switching: the role of c-Myc
N Rangarajan, Z Fox, A Singh, P Kulkarni, G Rangarajan
Journal of Theoretical Biology 386, 105-114, 2015
Enabling reactive microscopy with MicroMator
ZR Fox, S Fletcher, A Fraisse, C Aditya, S Sosa-Carrillo, J Petit, S Gilles, ...
Nature communications 13 (1), 1-8, 2022
Computational design and interpretation of single-RNA translation experiments
LU Aguilera, W Raymond, ZR Fox, M May, E Djokic, T Morisaki, ...
PLoS computational biology 15 (10), e1007425, 2019
Bayesian estimation for stochastic gene expression using multifidelity models
HD Vo, Z Fox, A Baetica, B Munsky
The Journal of Physical Chemistry B 123 (10), 2217-2234, 2019
MicroMator: Open and Flexible Software for Reactive Microscopy
ZR Fox, S Fletcher, A Fraisse, C Aditya, S Sosa-Carrillo, S Gilles, ...
bioRxiv, 2021
Optimal Design of Single-Cell Experiments within Temporally Fluctuating Environments
ZR Fox, G Neuert, B Munsky
Complexity 2020, 2020
Stochasticity or Noise in Biochemical Reactions
Z Fox, B Munsky
arXiv preprint arXiv:1708.09264, 2017
Diverse cell stimulation kinetics identify predictive signal transduction models
H Jashnsaz, ZR Fox, JJ Hughes, G Li, B Munsky, G Neuert
Iscience 23 (10), 101565, 2020
Building predictive signaling models by perturbing yeast cells with time-varying stimulations resulting in distinct signaling responses
H Jashnsaz, ZR Fox, B Munsky, G Neuert
STAR protocols 2 (3), 100660, 2021
Stochastic analysis of protein-mediated and microRNA-mediated feedback circuits in HIV
Z Fox, A Singh
IFAC Proceedings Volumes 47 (3), 1146-1151, 2014
Using mechanistic models and machine learning to design single-color multiplexed Nascent Chain Tracking experiments
WS Raymond, S Ghaffari, LU Aguilera de Lira, E Ron, T Morisaki, ZR Fox, ...
bioRxiv, 2023.01. 25.525583, 2023
Extracting Information from Stochastic Trajectories of Gene Expression
ZR Fox
arXiv preprint arXiv:2206.14874, 2022
Diverse Time-Varying Cell Stimulations Identify Predictive Signal Transduction Models
H Jashnsaz, Z Fox, JJ Hughes, G Li, B Munsky, G Neuert
Biophysical Journal 120 (3), 261a, 2021
Integrating Discrete Stochastic Models with Single-Cell and Single-Molecule Experiments
ZR Fox
Colorado State University, 2019
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