orkun s soyer
orkun s soyer
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Cited by
Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
The ISME journal 10 (11), 2557-2568, 2016
Synthetic microbial communities
T Großkopf, OS Soyer
Current opinion in microbiology 18, 72-77, 2014
Cooperation in microbial communities and their biotechnological applications
M Cavaliere, S Feng, OS Soyer, JI Jiménez
Environmental microbiology 19 (8), 2949-2963, 2017
The evolution of connectivity in metabolic networks
T Pfeiffer, OS Soyer, S Bonhoeffer
PLoS biology 3 (7), e228, 2005
The roles of integration in molecular systems biology
MA O’malley, OS Soyer
Studies in History and Philosophy of Science Part C: Studies in History and …, 2012
Evolution of complexity in signaling pathways
OS Soyer, S Bonhoeffer
Proceedings of the National Academy of Sciences 103 (44), 16337-16342, 2006
Microbial diversity arising from thermodynamic constraints
T Großkopf, OS Soyer
The ISME journal 10 (11), 2725-2733, 2016
STRONG: metagenomics strain resolution on assembly graphs
C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ...
Genome biology 22, 1-34, 2021
Evolutionary systems biology
OS Soyer
Springer Science & Business Media, 2012
Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
T Großkopf, J Consuegra, J Gaffé, JC Willison, RE Lenski, OS Soyer, ...
BMC evolutionary biology 16, 1-15, 2016
A single community dominates structure and function of a mixture of multiple methanogenic communities
P Sierocinski, K Milferstedt, F Bayer, T Großkopf, M Alston, S Bastkowski, ...
Current Biology 27 (21), 3390-3395. e4, 2017
Evolution under fluctuating environments explains observed robustness in metabolic networks
OS Soyer, T Pfeiffer
PLoS Computational Biology 6 (8), e1000907, 2010
Signal transduction networks: topology, response and biochemical processes
OS Soyer, M Salathe, S Bonhoeffer
Journal of theoretical biology 238 (2), 416-425, 2006
Impact of spatial organization on a novel auxotrophic interaction among soil microbes
X Jiang, C Zerfaß, S Feng, R Eichmann, M Asally, P Schäfer, OS Soyer
The ISME journal 12 (6), 1443-1456, 2018
Scanning ion conductance microscopy reveals differences in the ionic environments of gram-positive and negative bacteria
K Cremin, BA Jones, J Teahan, GN Meloni, D Perry, C Zerfass, M Asally, ...
Analytical chemistry 92 (24), 16024-16032, 2020
Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways
K McClymont, OS Soyer
Nucleic acids research 41 (11), e113-e113, 2013
Simulating the evolution of signal transduction pathways
OS Soyer, T Pfeiffer, S Bonhoeffer
Journal of theoretical biology 241 (2), 223-232, 2006
Bioelectrical understanding and engineering of cell biology
Z Schofield, GN Meloni, P Tran, C Zerfass, G Sena, Y Hayashi, M Grant, ...
Journal of the Royal Society Interface 17 (166), 20200013, 2020
Bistability in feedback circuits as a byproduct of evolution of evolvability
H Kuwahara, OS Soyer
Molecular systems biology 8 (1), 564, 2012
Depicting a protein’s two faces: GPCR classification by phylogenetic tree-based HMMs
B Qian, OS Soyer, RR Neubig, RA Goldstein
FEBS letters 554 (1-2), 95-99, 2003
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