| Promoter architecture dictates cell-to-cell variability in gene expression DL Jones, RC Brewster, R Phillips Science 346 (6216), 1533-1536, 2014 | 241 | 2014 |
| Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli RC Brewster, DL Jones, R Phillips PLoS computational biology 8 (12), e1002811, 2012 | 216 | 2012 |
| Kinetics of dCas9 target search in Escherichia coli D Jones, C Unoson, P Leroy, V Curic, J Elf Biophysical Journal 112 (3), 314a, 2017 | 192 | 2017 |
| Effect of promoter architecture on the cell-to-cell variability in gene expression A Sanchez, HG Garcia, D Jones, R Phillips, J Kondev PLoS computational biology 7 (3), e1001100, 2011 | 173 | 2011 |
| Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria NM Belliveau, SL Barnes, WT Ireland, DL Jones, MJ Sweredoski, ... Proceedings of the National Academy of Sciences 115 (21), E4796-E4805, 2018 | 103 | 2018 |
| Time-resolved imaging-based CRISPRi screening D Camsund, MJ Lawson, J Larsson, D Jones, S Zikrin, D Fange, J Elf Nature methods 17 (1), 86-92, 2020 | 72 | 2020 |
| Practically-exploitable cryptographic vulnerabilities in matrix MR Albrecht, S Celi, B Dowling, D Jones 2023 IEEE Symposium on Security and Privacy (SP), 164-181, 2023 | 28 | 2023 |
| Bursting onto the scene? Exploring stochastic mRNA production in bacteria D Jones, J Elf Current opinion in microbiology 45, 124-130, 2018 | 27 | 2018 |
| Comparison of the theoretical and real-world evolutionary potential of a genetic circuit M Razo-Mejia, JQ Boedicker, D Jones, A DeLuna, JB Kinney, R Phillips Physical biology 11 (2), 026005, 2014 | 23 | 2014 |
| Measuring cis-regulatory energetics in living cells using allelic manifolds TL Forcier, A Ayaz, MS Gill, D Jones, R Phillips, JB Kinney Elife 7, e40618, 2018 | 21 | 2018 |
| Device-oriented group messaging: a formal cryptographic analysis of matrix’core MR Albrecht, B Dowling, D Jones 2024 IEEE Symposium on Security and Privacy (SP), 2666-1685, 2024 | 3 | 2024 |
| Precision measurements of regulatory energetics in living cells T Forcier, A Ayaz, M Gill, JB Kinney bioRxiv, 2018 | 1 | 2018 |
| Anti-correlation of LacI association and dissociation rates observed in living cells V Kandavalli, S Zikrin, J Elf, D Jones bioRxiv, 2024.08. 21.608596, 2024 | | 2024 |
| Real-time pooled optical screening with single-cell isolation capability P Karempudi, E Amselem, D Jones, Z Khaji, M Tenje, J Elf bioRxiv, 2023.09. 21.558600, 2023 | | 2023 |
| Single cell capture and sequencing after large scale phenotyping of bacterial populations P Karempudi, D Jones, E Amselem, G Brandis, M Tenje, J Elf Biophysical Journal 121 (3), 61a, 2022 | | 2022 |
| EU 枋 AK Jones, DL Jones, P Cross | | 2014 |
| Do barnacles act as a potential reservoir for pathogenic bacteria on commercial shellfish beds? K Clements, SK Malham, L Giminez, DL Jones | | 2014 |
| Sequence-Function Relationships in E. coli Transcriptional Regulation D Jones California Institute of Technology, 2014 | | 2014 |
| Is transcriptional noise universal? Single cell readout of mRNA copy numbers in systematically designed promoters. RC Brewster, D Jones, R Phillips MOLECULAR BIOLOGY OF THE CELL 23, 2012 | | 2012 |
| Using Sequencing to Measure DNA Looping Probability in E. Coli. S Barnes, D Jones, J Kinney, YJ Chen, F Weinert, J Boedicker, R Phillips MOLECULAR BIOLOGY OF THE CELL 23, 2012 | | 2012 |
