Sergei L Kosakovsky Pond

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	Všetky	Od 2020
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187 článkov

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Na základe mandátov na financovanie

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Simon DW FrostMicrosoft PremonitionOverená e-mailová adresa na: microsoft.com
Davey SmithProfessor of Medicine, University of California, San DiegoOverená e-mailová adresa na: ucsd.edu
Joel WertheimUniversity of California San DiegoOverená e-mailová adresa na: ucsd.edu
Konrad SchefflerIlluminaOverená e-mailová adresa na: illumina.com
Ben MurrellDepartment of Microbiology, Tumor and Cell Biology, Karolinska InstitutetOverená e-mailová adresa na: ki.se
Steven WeaverInstitute for Genomics and Evolutionary Medicine, Temple UniversityOverená e-mailová adresa na: temple.edu
Susan LittleUniversity of California San DiegoOverená e-mailová adresa na: health.ucsd.edu
Art FY PoonWestern UniversityOverená e-mailová adresa na: uwo.ca
Spencer MuseProfessor of Statistics, North Carolina State UniversityOverená e-mailová adresa na: ncsu.edu
Wayne DelportSimplify Genomics, IncOverená e-mailová adresa na: simplifygenomics.com
Stephen D. ShankTemple UniversityOverená e-mailová adresa na: temple.edu
Mike GravenorProfessor of Biostatistics and Epidemiology, Swansea UniversityOverená e-mailová adresa na: swan.ac.uk
Anton NekrutenkoPenn State UniversityOverená e-mailová adresa na: nekrut.org
Darren MartinUniversity of Cape TownOverená e-mailová adresa na: uct.ac.za
Robert ShaferProfessor of Medicine, Stanford UniversityOverená e-mailová adresa na: stanford.edu
Philippe LemeyFull Professor, KU LeuvenOverená e-mailová adresa na: kuleuven.be
Martin D SmithSoftware Developer, Pacific Biosciences of CaliforniaOverená e-mailová adresa na: pacificbiosciences.com
David L RobertsonProfessor, CVR Bioinformatics, MRC-University of Glasgow Centre for Virus ResearchOverená e-mailová adresa na: glasgow.ac.uk
Stephanie J SpielmanChildhood Cancer Data Lab, Alex's Lemonade Stand FoundationOverená e-mailová adresa na: ccdatalab.org
David PosadaProfessor of Genetics, CINBIO, University of Vigo, SpainOverená e-mailová adresa na: uvigo.es

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Sergei L Kosakovsky Pond

Professor of Biology, Institute for Genomics and Evolutionary Medicine, Temple University

Overená e-mailová adresa na: temple.edu - Domovská stránka

Viral evolution phylogenetics evolutionary modeling algorithms


Názov Zoradiť podľa citácií Zoradiť podľa roka Zoradiť podľa názvu	Citované v Citované v	Rok
HyPhy: hypothesis testing using phylogenies SLK Pond, SDW Frost, SV Muse Bioinformatics 21 (5), 676-679, 2005	3318	2005
Not so different after all: a comparison of methods for detecting amino acid sites under selection SL Kosakovsky Pond, SDW Frost Molecular biology and evolution 22 (5), 1208-1222, 2005	1929	2005
Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, ... PLoS genetics 8 (7), e1002764, 2012	1702	2012
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021	1683	2021
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022	1612	2022
Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021	1601	2021
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments SLK Pond, SDW Frost Bioinformatics 21 (10), 2531-2533, 2005	1515	2005
Not so different after all: a comparison of methods for detecting amino acid sites under selection SLK Pond, SD Frost Mol Biol Evol 22 (5), 1208-1222, 2005	1397	2005
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond Bioinformatics 26 (19), 2455-2457, 2010	1334	2010
FUBAR: a fast, unconstrained bayesian approximation for inferring selection B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ... Molecular biology and evolution 30 (5), 1196-1205, 2013	1247	2013
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020	1227	2020
The biological and clinical significance of emerging SARS-CoV-2 variants K Tao, PL Tzou, J Nouhin, RK Gupta, T de Oliveira, SL Kosakovsky Pond, ... Nature Reviews Genetics 22 (12), 757-773, 2021	1095	2021
Automated phylogenetic detection of recombination using a genetic algorithm SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Molecular biology and evolution 23 (10), 1891-1901, 2006	1019	2006
GARD: a genetic algorithm for recombination detection SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Bioinformatics 22 (24), 3096-3098, 2006	865	2006
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond Molecular biology and evolution 35 (3), 773-777, 2018	820	2018
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015	715	2015
Persistent HIV-1 replication maintains the tissue reservoir during therapy R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, ... Nature 530 (7588), 51-56, 2016	707	2016
RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015	636	2015
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022	614	2022
Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015	562	2015

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