Andrew E. Jaffe
Andrew E. Jaffe
VP, Head of Data Sciences, Neumora Therapeutics
Verified email at - Homepage
Cited by
Cited by
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
JT Leek, WE Johnson, HS Parker, AE Jaffe, JD Storey
Bioinformatics 28 (6), 882-883, 2012
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ...
Bioinformatics 30 (10), 1363-1369, 2014
DNA methylation age of blood predicts all-cause mortality in later life
RE Marioni, S Shah, AF McRae, BH Chen, E Colicino, SE Harris, J Gibson, ...
Genome biology 16, 1-12, 2015
Accounting for cellular heterogeneity is critical in epigenome-wide association studies
AE Jaffe, RA Irizarry
Genome biology 15, 1-9, 2014
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ...
Science 362 (6420), eaat8127, 2018
Comprehensive functional genomic resource and integrative model for the human brain
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
Science 362 (6420), eaat8464, 2018
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243-246, 2015
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies
AE Jaffe, P Murakami, H Lee, JT Leek, MD Fallin, AP Feinberg, RA Irizarry
International journal of epidemiology 41 (1), 200-209, 2012
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
KR Maynard, L Collado-Torres, LM Weber, C Uytingco, BK Barry, ...
Nature neuroscience 24 (3), 425-436, 2021
sva: Surrogate variable analysis
JT Leek, WE Johnson, HS Parker, EJ Fertig, AE Jaffe, JD Storey, Y Zhang, ...
R package version 3 (0), 882-883, 2019
Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex
AE Jaffe, Y Gao, A Deep-Soboslay, R Tao, TM Hyde, DR Weinberger, ...
Nature neuroscience 19 (1), 40-47, 2016
Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium
SK Ganesh, NA Zakai, FJA Van Rooij, N Soranzo, AV Smith, MA Nalls, ...
Nature genetics 41 (11), 1191-1198, 2009
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
The psychENCODE project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis
AE Jaffe, RE Straub, JH Shin, R Tao, Y Gao, L Collado-Torres, ...
Nature neuroscience 21 (8), 1117-1125, 2018
Polyester: simulating RNA-seq datasets with differential transcript expression
AC Frazee, AE Jaffe, B Langmead, JT Leek
Bioinformatics 31 (17), 2778-2784, 2015
Convergence of placenta biology and genetic risk for schizophrenia
G Ursini, G Punzi, Q Chen, S Marenco, JF Robinson, A Porcelli, ...
Nature medicine 24 (6), 792-801, 2018
Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network
MJ McConnell, JV Moran, A Abyzov, S Akbarian, T Bae, I Cortes-Ciriano, ...
Science 356 (6336), eaal1641, 2017
A Bayesian framework for multiple trait colocalization from summary association statistics
C Giambartolomei, J Zhenli Liu, W Zhang, M Hauberg, H Shi, J Boocock, ...
Bioinformatics 34 (15), 2538-2545, 2018
Global DNA hypomethylation is associated with in utero exposure to cotinine and perfluorinated alkyl compounds
R Guerrero-Preston, LR Goldman, P Brebi-Mieville, C Ili-Gangas, ...
Epigenetics 5 (6), 539-546, 2010
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