James McInerney
James McInerney
Chair in Evolutionary Biology, University of Nottingham
Verified email at - Homepage
Cited by
Cited by
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
T Keane, C Creevey, M Pentony, T Naughton, JO Mclnerney
BMC evolutionary biology 6 (1), 29, 2006
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
S Liu, ED Lorenzen, M Fumagalli, B Li, K Harris, Z Xiong, L Zhou, ...
Cell 157 (4), 785-794, 2014
Why prokaryotes have pangenomes
JO McInerney, A McNally, MJ O'Connell
Nature Microbiology 2 (4), 1-5, 2017
Endosymbiotic origin and differential loss of eukaryotic genes
C Ku, S Nelson-Sathi, M Roettger, FL Sousa, PJ Lockhart, D Bryant, ...
Nature 524 (7566), 427-432, 2015
GCUA: general codon usage analysis.
JO McInerney
Bioinformatics (Oxford, England) 14 (4), 372-373, 1998
Replicational and transcriptional selection on codon usage in Borrelia burgdorferi
JO McInerney
Proceedings of the National Academy of Sciences 95 (18), 10698-10703, 1998
Origins of major archaeal clades correspond to gene acquisitions from bacteria
S Nelson-Sathi, FL Sousa, M Roettger, N Lozada-Chávez, T Thiergart, ...
Nature 517 (7532), 77-80, 2015
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
S Nelson-Sathi, T Dagan, G Landan, A Janssen, M Steel, JO McInerney, ...
Proceedings of the National Academy of Sciences 109 (50), 20537-20542, 2012
Clann: investigating phylogenetic information through supertree analyses
CJ Creevey, JO McInerney
Bioinformatics 21 (3), 390-392, 2005
Supertrees disentangle the chimerical origin of eukaryotic genomes
D Pisani, JA Cotton, JO McInerney
Molecular biology and evolution 24 (8), 1752-1760, 2007
Metazoan opsin evolution reveals a simple route to animal vision
R Feuda, SC Hamilton, JO McInerney, D Pisani
Proceedings of the National Academy of Sciences 109 (46), 18868-18872, 2012
Networks: expanding evolutionary thinking
E Bapteste, L van Iersel, A Janke, S Kelchner, S Kelk, JO McInerney, ...
Trends in Genetics 29 (8), 439-441, 2013
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations
A McNally, Y Oren, D Kelly, B Pascoe, S Dunn, T Sreecharan, M Vehkala, ...
PLoS genetics 12 (9), e1006280, 2016
Genome phylogenies indicate a meaningful α-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
DA Fitzpatrick, CJ Creevey, JO McInerney
Molecular Biology and Evolution 23 (1), 74-85, 2006
The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata …
GK Philip, CJ Creevey, JO McInerney
Molecular biology and evolution 22 (5), 1175-1184, 2005
A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases
CA Cummins, JO McInerney
Systematic biology 60 (6), 833-844, 2011
The hybrid nature of the Eukaryota and a consilient view of life on Earth
JO McInerney, MJ O'connell, D Pisani
Nature Reviews Microbiology 12 (6), 449-455, 2014
Does a tree–like phylogeny only exist at the tips in the prokaryotes?
CJ Creevey, DA Fitzpatrick, GK Philip, RJ Kinsella, MJ O'Connell, ...
Proceedings of the Royal Society of London. Series B: Biological Sciences …, 2004
TOPD/FMTS: a new software to compare phylogenetic trees
P Puigbò, S Garcia-Vallvé, JO McInerney
Bioinformatics 23 (12), 1556-1558, 2007
Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder
JO McInerney, M Wilkinson, JW Patching, TM Embley, R Powell
Applied and Environmental Microbiology 61 (4), 1646-1648, 1995
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