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Gail Rosen
Gail Rosen
Professor of ECE, Drexel University
Verified email at ece.drexel.edu - Homepage
Title
Cited by
Cited by
Year
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of the royal society interface 15 (141), 20170387, 2018
21152018
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis
KE Sullam, SD Essinger, CA Lozupone, MP O’CONNOR, GL Rosen, ...
Molecular ecology 21 (13), 3363-3378, 2012
10002012
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18, 1-19, 2017
3262017
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads
GL Rosen, ER Reichenberger, AM Rosenfeld
Bioinformatics 27 (1), 127, 2011
2582011
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
2292022
Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms
Y Lan, Q Wang, JR Cole, GL Rosen
PLoS one 7 (3), e32491, 2012
2172012
Emerging priorities for microbiome research
CM Cullen, KK Aneja, S Beyhan, CE Cho, S Woloszynek, M Convertino, ...
Frontiers in microbiology 11, 491374, 2020
1812020
Metagenome fragment classification using N-mer frequency profiles
G Rosen, E Garbarine, D Caseiro, R Polikar, B Sokhansanj
Advances in Bioinformatics 2008, 2008
1382008
Multi-layer and recursive neural networks for metagenomic classification
G Ditzler, R Polikar, G Rosen
IEEE transactions on nanobioscience 14 (6), 608-616, 2015
1022015
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
Y Lan, G Rosen, R Hershberg
Microbiome 4, 1-13, 2016
902016
Prokaryotic nucleotide composition is shaped by both phylogeny and the environment
ER Reichenberger, G Rosen, U Hershberg, R Hershberg
Genome biology and evolution 7 (5), 1380-1389, 2015
902015
Nanopore sequencing in microgravity
ABR McIntyre, L Rizzardi, AM Yu, N Alexander, GL Rosen, DJ Botkin, ...
npj Microgravity 2 (1), 1-9, 2016
792016
Examining coding structure and redundancy in DNA
G Rosen
Engineering in Medicine and Biology Magazine, IEEE 25 (1), 62-68, 2006
632006
Selecting age-related functional characteristics in the human gut microbiome
Y Lan, A Kriete, GL Rosen
Microbiome 1, 1-12, 2013
612013
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing
D Koslicki, S Foucart, G Rosen
Bioinformatics 29 (17), 2096-2102, 2013
612013
Combining gene prediction methods to improve metagenomic gene annotation
N Yok, G Rosen
BMC bioinformatics 12 (1), 20, 2011
602011
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization
Z Zhao, BA Sokhansanj, C Malhotra, K Zheng, GL Rosen
PLoS computational biology 16 (9), e1008269, 2020
552020
Fizzy: feature subset selection for metagenomics
G Ditzler, JC Morrison, Y Lan, GL Rosen
BMC bioinformatics 16, 1-8, 2015
542015
WGSQuikr: fast whole-genome shotgun metagenomic classification
D Koslicki, S Foucart, G Rosen
PloS one 9 (3), e91784, 2014
542014
An introduction to machine learning for students in secondary education
SD Essinger, GL Rosen
2011 Digital Signal Processing and Signal Processing Education Meeting (DSP …, 2011
442011
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Articles 1–20