Armita Nourmohammad
Armita Nourmohammad
Associate Professor, University of Washington
Verified email at - Homepage
Cited by
Cited by
Gene expression variability across cells and species shapes innate immunity
T Hagai, X Chen, RJ Miragaia, R Rostom, T Gomes, N Kunowska, ...
Nature 563 (7730), 197-202, 2018
Host-pathogen coevolution and the emergence of broadly neutralizing antibodies in chronic infections
A Nourmohammad, J Otwinowski, JB Plotkin
PLoS genetics 12 (7), e1006171, 2016
Adaptive evolution of gene expression in Drosophila
A Nourmohammad, J Rambeau, T Held, V Kovacova, J Berg, M Lässig
Cell reports 20 (6), 1385-1395, 2017
Deep generative selection models of T and B cell receptor repertoires with soNNia
G Isacchini, AM Walczak, T Mora, A Nourmohammad
Proceedings of the National Academy of Sciences 118 (14), e2023141118, 2021
Major antigenic site B of human influenza H3N2 viruses has an evolving local fitness landscape
NC Wu, J Otwinowski, AJ Thompson, CM Nycholat, A Nourmohammad, ...
Nature communications 11 (1), 1233, 2020
Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19
Z Montague, H Lv, J Otwinowski, WS DeWitt, G Isacchini, GK Yip, WW Ng, ...
Cell Reports 35 (8), 2021
Fierce selection and interference in B-cell repertoire response to chronic HIV-1
A Nourmohammad, J Otwinowski, M Łuksza, T Mora, AM Walczak
Molecular biology and evolution 36 (10), 2184-2194, 2019
The size of the immune repertoire of bacteria
S Bradde, A Nourmohammad, S Goyal, V Balasubramanian
Proceedings of the National Academy of Sciences 117 (10), 5144-5151, 2020
Universality and predictability in molecular quantitative genetics
A Nourmohammad, T Held, M Lässig
Current opinion in genetics & development 23 (6), 684-693, 2013
Evolution of molecular phenotypes under stabilizing selection
A Nourmohammad, S Schiffels, M Lässig
Journal of Statistical Mechanics: Theory and Experiment 2013 (01), P01012, 2013
Analytical and numerical studies of sequence dependence of passage times for translocation of heterobiopolymers through nanopores
RH Abdolvahab, F Roshani, A Nourmohammad, M Sahimi, M Tabar
The Journal of Chemical Physics 129 (23), 2008
Adaptive evolution of molecular phenotypes
T Held, A Nourmohammad, M Lässig
Journal of Statistical Mechanics: Theory and Experiment 2014 (9), P09029, 2014
Formation of regulatory modules by local sequence duplication
A Nourmohammad, M Lässig
PLoS Computational Biology 7 (10), e1002167, 2011
Optimal evolutionary control for artificial selection on molecular phenotypes
A Nourmohammad, C Eksin
Physical Review X 11 (1), 011044, 2021
Antigenic evolution of human influenza H3N2 neuraminidase is constrained by charge balancing
Y Wang, R Lei, A Nourmohammad, NC Wu
Elife 10, e72516, 2021
Optimal evolutionary decision-making to store immune memory
OH Schnaack, A Nourmohammad
Elife 10, e61346, 2021
Design of an optimal combination therapy with broadly neutralizing antibodies to suppress HIV-1
C LaMont, J Otwinowski, K Vanshylla, H Gruell, F Klein, ...
Elife 11, e76004, 2022
Generative models of T-cell receptor sequences
G Isacchini, Z Sethna, Y Elhanati, A Nourmohammad, AM Walczak, ...
Physical Review E 101 (6), 062414, 2020
Learning the shape of protein microenvironments with a holographic convolutional neural network
MN Pun, A Ivanov, Q Bellamy, Z Montague, C LaMont, P Bradley, ...
Proceedings of the National Academy of Sciences 121 (6), e2300838121, 2024
Steering and controlling evolution—from bioengineering to fighting pathogens
M Lässig, V Mustonen, A Nourmohammad
Nature Reviews Genetics 24 (12), 851-867, 2023
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