Bahman Afsari
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Detection and localization of surgically resectable cancers with a multi-analyte blood test
JD Cohen, L Li, Y Wang, C Thoburn, B Afsari, L Danilova, C Douville, ...
Science 359 (6378), 926-930, 2018
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers
Y Wang, L Li, C Douville, JD Cohen, TT Yen, I Kinde, K Sundfelt, SK Kjær, ...
Science translational medicine 10 (433), eaap8793, 2018
Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy
SU Springer, CH Chen, MDC Rodriguez Pena, L Li, C Douville, Y Wang, ...
Elife 7, e32143, 2018
A multimodality test to guide the management of patients with a pancreatic cyst
S Springer, DL Masica, M Dal Molin, C Douville, CJ Thoburn, B Afsari, L Li, ...
Science translational medicine 11 (501), eaav4772, 2019
Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks
DZ Kelley, EL Flam, E Izumchenko, LV Danilova, HA Wulf, T Guo, ...
Cancer research 77 (23), 6538-6550, 2017
switchBox: an R package for k–Top Scoring Pairs classifier development
B Afsari, EJ Fertig, D Geman, L Marchionni
Bioinformatics 31 (2), 273-274, 2015
A simple and reproducible breast cancer prognostic test
L Marchionni, B Afsari, D Geman, JT Leek
BMC genomics 14, 1-7, 2013
The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations
X Lin, B Afsari, L Marchionni, L Cope, G Parmigiani, D Naiman, D Geman
BMC bioinformatics 10, 1-18, 2009
Learning Dysregulated Pathways in Cancers from Differential Variability Analysis
B Afsari, D Geman, EJ Fertig
Cancer Informatics 13 (S5), 61-67, 2014
Rank Discriminants for Predicting Phenotypes from RNA Expression
B Afsari, UB Neto, D Geman
Annals of Applied Statistics 8 (3), 1469-1491, 2014
A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers
T Guo, A Sakai, B Afsari, M Considine, L Danilova, AV Favorov, ...
Cancer research 77 (19), 5248-5258, 2017
Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data
EF Davis-Marcisak, TD Sherman, P Orugunta, GL Stein-O'Brien, ...
Cancer research 79 (19), 5102-5112, 2019
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines
M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ...
Cell systems 5 (5), 485-497. e3, 2017
Microarray classification from several two-gene expression comparisons
D Geman, B Afsari, AC Tan, DQ Naiman
Machine Learning and Applications, 2008. ICMLA'08. Seventh International …, 2008
Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer
B Afsari, A Kuo, YF Zhang, L Li, K Lahouel, L Danilova, A Favorov, ...
Elife 10, e61082, 2021
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer
B Afsari, T Guo, M Considine, L Florea, LT Kagohara, GL Stein-O’Brien, ...
Bioinformatics 34 (11), 1859-1867, 2018
Newly identified members of FGFR1 splice variants engage in cross-talk with AXL/AKT axis in salivary adenoid cystic carcinoma
JO Humtsoe, HS Kim, B Leonard, S Ling, B Keam, L Marchionni, B Afsari, ...
Cancer Research 81 (4), 1001-1013, 2021
A simple Transport protocol for wireless sensor Networks
VS Mansouri, B Afsari, H Shahmansouri
2005 International Conference on Intelligent Sensors, Sensor Networks and …, 2005
Consortium HPN-DREAM
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y …, 2016
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