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James Tiedje
James Tiedje
University Distinguished Professor Emeritus, Michigan State University
Verified email at msu.edu
Title
Cited by
Cited by
Year
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Q Wang, GM Garrity, JM Tiedje, JR Cole
Applied and environmental microbiology 73 (16), 5261-5267, 2007
203912007
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
JR Cole, Q Wang, E Cardenas, J Fish, B Chai, RJ Farris, ...
Nucleic acids research 37 (suppl_1), D141-D145, 2009
55342009
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
J Goris, KT Konstantinidis, JA Klappenbach, T Coenye, P Vandamme, ...
International journal of systematic and evolutionary microbiology 57 (1), 81-91, 2007
45772007
Ribosomal Database Project: data and tools for high throughput rRNA analysis
JR Cole, Q Wang, JA Fish, B Chai, DM McGarrell, Y Sun, CT Brown, ...
Nucleic acids research 42 (D1), D633-D642, 2014
45712014
DNA recovery from soils of diverse composition
J Zhou, MA Bruns, JM Tiedje
Applied and environmental microbiology 62 (2), 316-322, 1996
40251996
Diverse and abundant antibiotic resistance genes in Chinese swine farms
YG Zhu, TA Johnson, JQ Su, M Qiao, GX Guo, RD Stedtfeld, ...
Proceedings of the National Academy of Sciences 110 (9), 3435-3440, 2013
25072013
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 102 (7), 2567-2572, 2005
22612005
Ecology of denitrification and dissimilatory nitrate reduction to ammonium
T JM
Biology of anaerobic microorganisms, 179-244, 1988
22361988
The RDP (ribosomal database project) continues
BL Maidak, JR Cole, TG Lilburn, CT Parker Jr, PR Saxman, JM Stredwick, ...
Nucleic acids research 28 (1), 173-174, 2000
22042000
Health risks from exposure to low levels of ionizing radiation: BEIR VII phase 2
National Research Council, Division on Earth, Life Studies, ...
National Academies Press, 2006
2125*2006
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
JR Cole, B Chai, RJ Farris, Q Wang, SA Kulam, DM McGarrell, GM Garrity, ...
Nucleic acids research 33 (suppl_1), D294-D296, 2005
17842005
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
JR Cole, B Chai, TL Marsh, RJ Farris, Q Wang, SA Kulam, S Chandra, ...
Nucleic acids research 31 (1), 442-443, 2003
16922003
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
JR Cole, B Chai, RJ Farris, Q Wang, AS Kulam-Syed-Mohideen, ...
Nucleic acids research 35 (suppl_1), D169-D172, 2007
13362007
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
MR Gillings, WH Gaze, A Pruden, K Smalla, JM Tiedje, YG Zhu
The ISME journal 9 (6), 1269-1279, 2015
12452015
In-feed antibiotic effects on the swine intestinal microbiome
T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ...
Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012
11682012
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis, JM Tiedje
Journal of bacteriology 187 (18), 6258-6264, 2005
11592005
Denitrification
JM Tiedje
Methods of Soil Analysis: Part 2 Chemical and Microbiological Properties 9 …, 1982
1140*1982
Climate warming enhances microbial network complexity and stability
MM Yuan, X Guo, L Wu, YA Zhang, N Xiao, D Ning, Z Shi, X Zhou, L Wu, ...
Nature Climate Change 11 (4), 343-348, 2021
11392021
Technologies and perspectives for achieving carbon neutrality
F Wang, JD Harindintwali, Z Yuan, M Wang, F Wang, S Li, Z Yin, L Huang, ...
The Innovation 2 (4), 2021
10942021
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
B Li, Y Yang, L Ma, F Ju, F Guo, JM Tiedje, T Zhang
The ISME journal 9 (11), 2490-2502, 2015
10862015
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