IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 47 (D1), D678-D686, 2019 | 176 | 2019 |
VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families JC Pons, D Paez-Espino, G Riera, N Ivanova, NC Kyrpides, M Llabrés Bioinformatics 37 (13), 1805-1813, 2021 | 96 | 2021 |
Metrics for phylogenetic networks I: Generalizations of the Robinson-Foulds metric G Cardona, M Llabrés, F Rosselló, G Valiente IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 46-61, 2008 | 75 | 2008 |
A distance metric for a class of tree-sibling phylogenetic networks G Cardona, M Llabrés, F Rosselló, G Valiente Bioinformatics 24 (13), 1481-1488, 2008 | 74 | 2008 |
A bi-categorical axiomatisation of concurrent graph rewriting F Gadducci, R Heckel, M Llabrés Electronic Notes in Theoretical Computer Science 29, 80-100, 1999 | 51 | 1999 |
Metrics for phylogenetic networks II: Nodal and triplets metrics G Cardona, M Llabrés, F Rosselló, G Valiente IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3), 454-469, 2008 | 44 | 2008 |
Nodal distances for rooted phylogenetic trees G Cardona, M Llabrés, F Rosselló, G Valiente Journal of mathematical biology 61 (2), 253-276, 2010 | 40 | 2010 |
On Nakhleh's metric for reduced phylogenetic networks G Cardona, M Llabrés, F Rosselló, G Valiente IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (4), 629-638, 2009 | 29 | 2009 |
Towards estimating the number of strains that make up a natural bacterial population T Viver, RE Conrad, LM Rodriguez-R, AS Ramírez, SN Venter, ... Nature Communications 15 (1), 544, 2024 | 26 | 2024 |
Comparison of galled trees G Cardona, M Llabres, F Rosselló, G Valiente IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (2), 410-427, 2010 | 23 | 2010 |
AligNet: alignment of protein-protein interaction networks A Alcalá, R Alberich, M Llabrés, F Rosselló, G Valiente BMC bioinformatics 21, 1-22, 2020 | 19 | 2020 |
The generalized Robinson-Foulds distance for phylogenetic trees M Llabrés, F Rosselló, G Valiente Journal of Computational Biology 28 (12), 1181-1195, 2021 | 17 | 2021 |
MP-Align: alignment of metabolic pathways R Alberich, M Llabrés, D Sánchez, M Simeoni, M Tuduri BMC Systems Biology 8, 1-16, 2014 | 14 | 2014 |
Pushout complements for arbitrary partial algebras M Llabrés, F Rosselló International Workshop on Theory and Application of Graph Transformations …, 1998 | 14 | 1998 |
The Comparison of Tree‐Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism‐Complete G Cardona, M Llabrés, F Rosselló, G Valiente The Scientific World Journal 2014 (1), 254279, 2014 | 13 | 2014 |
Metabolomics analysis: Finding out metabolic building blocks R Alberich, JA Castro, M Llabres, P Palmer-Rodriguez PloS one 12 (5), e0177031, 2017 | 12 | 2017 |
A new family of metrics for biopolymer contact structures M Llabrés, F Rosselló Computational biology and chemistry 28 (1), 21-37, 2004 | 12 | 2004 |
Path lengths in tree-child time consistent hybridization networks G Cardona, M Llabrés, F Rosselló, G Valiente Information Sciences 180 (3), 366-383, 2010 | 11 | 2010 |
Double-pullback graph transitions: A rule-based framework with incomplete information H Ehrig, R Heckel, M Llabrés, F Orejas, J Padberg, G Rozenberg International Workshop on Theory and Application of Graph Transformations …, 1998 | 11 | 1998 |
Concurrency and loose semantics of open graph transformation systems R Heckel, M LLabrés, H Ehrig, F Orejas Mathematical Structures in Computer Science 12 (4), 349-376, 2002 | 10 | 2002 |