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Byron J. Smith
Byron J. Smith
Bioinformatics Fellow, The Gladstone Institutes
Verified email at gladstone.ucsf.edu - Homepage
Title
Cited by
Cited by
Year
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
SF Stoddard, BJ Smith, R Hein, BRK Roller, TM Schmidt
Nucleic acids research 43 (D1), D593-D598, 2015
10332015
Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice
BJ Smith, RA Miller, AC Ericsson, DC Harrison, R Strong, TM Schmidt
BMC Microbiology 19 (130), 1-16, 2019
3002019
Muribaculaceae genomes assembled from metagenomes suggest genetic drivers of differential response to acarbose treatment in mice
BJ Smith, RA Miller, TM Schmidt
mSphere 6 (6), 2021
892021
Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis
BJ Smith, Y Piceno, M Zydek, B Zhang, LA Syriani, JP Terdiman, ...
Scientific Reports 12 (1), 1-14, 2022
262022
Scalable microbial strain inference in metagenomic data using StrainFacts
BJ Smith, X Li, ZJ Shi, A Abate, KS Pollard
Frontiers in Bioinformatics 2 (867386), 2022
152022
Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn’s disease
D Häcker, K Siebert, BJ Smith, N Köhler, A Riva, A Mahapatra, H Heimes, ...
Cell Host & Microbe 32 (11), 2019-2034. e8, 2024
6*2024
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
BJ Smith, C Zhao, V Dubinkina, X Jin, L Zahavi, S Shoer, ...
bioRxiv, 2024.04. 10.588779, 2024
42024
Sustained mucosal colonization and fecal metabolic dysfunction by Bacteroides associates with fecal microbial transplant failure in ulcerative colitis patients
B Zhang, KM Magnaye, E Stryker, J Moltzau-Anderson, CE Porsche, ...
Scientific Reports 14 (1), 18558, 2024
32024
36 ANTIBIOTIC PRETREATMENT PRIOR TO FECAL MICROBIOTA TRANSPLANTATION INCREASES RATES OF REMISSION IN PATIENTS WITH MILD TO MODERATE ULCERATIVE COLITIS: RESULTS FROM A PILOT …
N El-Nachef, B Smith, Y Piceno, M Zydek, L Syriani, JP Terdiman, A Ma, ...
Gastroenterology 158 (6), s-14, 2020
22020
Genotyping Microbial Communities with MIDAS2: From Metagenomic Reads to Allele Tables
C Zhao, M Goldman, BJ Smith, KS Pollard
Current Protocols, 2022
12022
Method and apparatus for treating tension pneumothorax using a rapid deployment chest port
AC Smith, R Luttrell, B Smith, C Springs
US Patent App. 17/314,004, 2021
12021
A DONOR-DERIVED BACTEROIDES FRAGILIS STRAIN ASSOCIATES WITH FECAL MICROBIAL TRANSPLANT FAILURE IN ULCERATIVE COLITIS PATIENTS
JM Anderson, H Steininger, H Sun, A Qualls, J Gardner, B Smith, ...
Gastroenterology 168 (3), S72, 2025
2025
Method and apparatus for treating tension pneumothorax using a rapid deployment chest port
R Luttrell, B Smith
US Patent App. 18/074,191, 2023
2023
Tissue marking device and methods of use thereof121224. 0
JR Henderson, C Springs, M Augustine, J Anderson, B Walsh, E Becher, ...
US Patent App. 17/971,250, 2023
2023
Evaluation of Le et al.: Challenges and opportunities for using data to understand equitability in science
BJ Smith, KS Pollard
Cell Systems 12 (9), 839-841, 2021
2021
Integrated Analysis of the Gut Microbiota and Their Fermentation Products in Mice Treated with the Longevity Enhancing Drug Acarbose
BJ Smith
2019
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