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Kim-Anh Lê Cao
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mixOmics: An R package for ‘omics feature selection and multiple data integration
F Rohart, B Gautier, A Singh, KA Lê Cao
PLoS computational biology 13 (11), e1005752, 2017
26422017
Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
KA Lê Cao, S Boitard, P Besse
BMC bioinformatics 12, 1-17, 2011
8612011
DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays
A Singh, CP Shannon, B Gautier, F Rohart, M Vacher, SJ Tebbutt, ...
Bioinformatics 35 (17), 3055-3062, 2019
639*2019
A sparse PLS for variable selection when integrating omics data
KA Lê Cao, D Rossouw, C Robert-granié, P Besse
Statistical Applications in Genetics & Molecular Biology 7 (1), 1-29, 2008
6172008
integrOmics: an R package to unravel relationships between two omics datasets
KA Lê Cao, I González, S Déjean
Bioinformatics 25 (21), 2855-2856, 2009
4472009
Citrullinated peptide dendritic cell immunotherapy in HLA risk genotype–positive rheumatoid arthritis patients
H Benham, HJ Nel, SC Law, AM Mehdi, S Street, N Ramnoruth, H Pahau, ...
Science translational medicine 7 (290), 290ra87-290ra87, 2015
3832015
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages
K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ...
Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012
3362012
Sparse canonical methods for biological data integration: application to a cross-platform study
KA Lê Cao, PGP Martin, C Robert-Granié, P Besse
BMC bioinformatics 10, 1-17, 2009
3352009
Visualising associations between paired ‘omics’ data sets
I González, KAL Cao, MJ Davis, S Déjean
BioData mining 5, 1-23, 2012
3072012
Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments
L Tian, X Dong, S Freytag, KA Lê Cao, S Su, A JalalAbadi, ...
Nature methods 16 (6), 479-487, 2019
2872019
Genome-wide characterization of the routes to pluripotency
SMI Hussein, MC Puri, PD Tonge, M Benevento, AJ Corso, JL Clancy, ...
Nature 516 (7530), 198-206, 2014
2412014
Variable selection for generalized canonical correlation analysis
A Tenenhaus, C Philippe, V Guillemot, KA Le Cao, J Grill, V Frouin
Biostatistics 15 (3), 569-583, 2014
2272014
Malignant transformation of oral epithelial dysplasia: a real-world evaluation of histopathologic grading
F Dost, K Le Cao, PJ Ford, C Ades, CS Farah
Oral surgery, oral medicine, oral pathology and oral radiology 117 (3), 343-352, 2014
2252014
MixOmics: Omics data integration project
KA Lê Cao, F Rohart, I Gonzalez, S Dejean
R package, 2013
194*2013
Independent principal component analysis for biologically meaningful dimension reduction of large biological data sets
F Yao, J Coquery, KA Lê Cao
BMC bioinformatics 13, 1-15, 2012
1822012
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing
MB Clark, TR Mercer, G Bussotti, T Leonardi, KR Haynes, J Crawford, ...
Nature methods 12 (4), 339-342, 2015
1752015
MixMC: a multivariate statistical framework to gain insight into microbial communities
KA Le Cao, ME Costello, VA Lakis, F Bartolo, XY Chua, R Brazeilles, ...
PloS one 11 (8), e0160169, 2016
1672016
Dynamic molecular changes during the first week of human life follow a robust developmental trajectory
AH Lee, CP Shannon, N Amenyogbe, TB Bennike, J Diray-Arce, OT Idoko, ...
Nature communications 10 (1), 1092, 2019
1572019
Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease
G Kong, KA Lê Cao, LM Judd, SS Li, T Renoir, AJ Hannan
Neurobiology of Disease 135, 104268, 2020
1522020
HLA alleles associated with risk of ankylosing spondylitis and rheumatoid arthritis influence the gut microbiome
M Asquith, PR Sternes, ME Costello, L Karstens, S Diamond, TM Martin, ...
Arthritis & rheumatology 71 (10), 1642-1650, 2019
1492019
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