Ozgur Akman
Ozgur Akman
Associate Professor of Mathematics for Biology and Medicine
Verified email at - Homepage
Cited by
Cited by
Peeking into pit fields: a multiple twinning model of secondary plasmodesmata formation in tobacco
C Faulkner, OE Akman, K Bell, C Jeffree, K Oparka
The Plant Cell 20 (6), 1504-1518, 2008
Quantitative analysis of regulatory flexibility under changing environmental conditions
KD Edwards, OE Akman, K Knox, PJ Lumsden, AW Thomson, PE Brown, ...
Molecular systems biology 6 (1), 424, 2010
Digital clocks: simple Boolean models can quantitatively describe circadian systems
OE Akman, S Watterson, A Parton, N Binns, AJ Millar, P Ghazal
Journal of The Royal Society Interface 9 (74), 2365-2382, 2012
Robustness from flexibility in the fungal circadian clock
OE Akman, DA Rand, PE Brown, AJ Millar
BMC systems biology 4, 1-16, 2010
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model
S Aitken, OE Akman
BMC systems biology 7, 1-12, 2013
Eye movement instabilities and nystagmus can be predicted by a nonlinear dynamics model of the saccadic system
OE Akman, DS Broomhead, RV Abadi, RA Clement
Journal of mathematical biology 51, 661-694, 2005
Isoform switching facilitates period control in the Neurospora crassa circadian clock
OE Akman, JCW Locke, S Tang, I Carré, AJ Millar, DA Rand
Molecular Systems Biology 4 (1), 164, 2008
Nonlinear dynamics in gene regulation promote robustness and evolvability of gene expression levels
A Steinacher, DG Bates, OE Akman, OS Soyer
PloS one 11 (4), e0153295, 2016
Complementary approaches to understanding the plant circadian clock
OE Akman, ML Guerriero, L Loewe, C Troein
arXiv preprint arXiv:1002.4661, 2010
Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network
OE Akman, F Ciocchetta, A Degasperi, ML Guerriero
Computational Methods in Systems Biology: 7th International Conference, CMSB …, 2009
Light and circadian regulation of clock components aids flexible responses to environmental signals
LE Dixon, SK Hodge, G van Ooijen, C Troein, OE Akman, AJ Millar
New Phytologist 203 (2), 568-577, 2014
Nonlinear time series analysis of jerk congenital nystagmus
OE Akman, DS Broomhead, RA Clement, RV Abadi
Journal of Computational Neuroscience 21, 153-170, 2006
Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection
D Cizmeci, EL Dempster, OL Champion, S Wagley, OE Akman, JL Prior, ...
Scientific reports 6 (1), 30861, 2016
Characterisation of congenital nystagmus waveforms in terms of periodic orbits
RA Clement, JP Whittle, MR Muldoon, RV Abadi, DS Broomhead, ...
Vision research 42 (17), 2123-2130, 2002
Reducing the complexity of mathematical models for the plant circadian clock by distributed delays
IT Tokuda, OE Akman, JCW Locke
Journal of theoretical biology 463, 155-166, 2019
Quantification and selection of ictogenic zones in epilepsy surgery
P Laiou, E Avramidis, MA Lopes, E Abela, M Müller, OE Akman, ...
Frontiers in neurology 10, 1045, 2019
Ultrasensitive negative feedback control: a natural approach for the design of synthetic controllers
F Montefusco, OE Akman, OS Soyer, DG Bates
PloS one 11 (8), e0161605, 2016
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology
R Adams, A Clark, A Yamaguchi, N Hanlon, N Tsorman, S Ali, ...
Bioinformatics 29 (5), 664-665, 2013
Stochastic models of cellular circadian rhythms in plants help to understand the impact of noise on robustness and clock structure
ML Guerriero, OE Akman, G van Ooijen
Frontiers in plant science 5, 104508, 2014
Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination
E Avramidis, OE Akman
BMC systems biology 11, 1-23, 2017
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