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Matú¹ Kala¹
Matú¹ Kala¹
Senior Engineer / Infrastructure Scientist, Department of Informatics, University of Bergen
Verified email at uib.no - Homepage
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Cited by
Cited by
Year
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
J Ison, M Kala¹, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ...
Bioinformatics 29 (10), 1325-1332, 2013
2992013
FreeContact: fast and free software for protein contact prediction from residue co-evolution
L Kaján, TA Hopf, M Kala¹, DS Marks, B Rost
BMC bioinformatics 15 (1), 85, 2014
1922014
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kala¹, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
1772016
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5, 5, 2014
692014
The bio.tools registry of software tools and data resources for the life sciences
J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kala¹, ...
Genome biology 20, 1-4, 2019
602019
Community-driven development for computational biology at Sprints, Hackathons and Codefests
S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ...
BMC bioinformatics 15, 1-7, 2014
532014
The Genomic HyperBrowser: an analysis web server for genome-scale data
GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ...
Nucleic acids research 41 (W1), W133-W141, 2013
482013
The EMBRACE web service collection
S Pettifer, J Ison, M Kala¹, D Thorne, P McDermott, I Jonassen, A Liaquat, ...
Nucleic acids research 38 (suppl_2), W683-W688, 2010
472010
Identifying elemental genomic track types and representing them uniformly
S Gundersen, M Kala¹, O Abul, A Frigessi, E Hovig, GK Sandve
BMC bioinformatics 12, 1-17, 2011
402011
BioXSD: the common data-exchange format for everyday bioinformatics web services
M Kala¹, P Puntervoll, A Joseph, E Barta¹evièiūtė, A Töpfer, ...
Bioinformatics 26 (18), i540-i546, 2010
332010
Robust cross-platform workflows: how technical and scientific communities collaborate to develop, test and share best practices for data analysis
S Möller, SW Prescott, L Wirzenius, P Reinholdtsen, B Chapman, P Prins, ...
Data Science and Engineering 2 (3), 232-244, 2017
262017
Community curation of bioinformatics software and data resources
J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raèek, ...
Briefings in bioinformatics 21 (5), 1697-1705, 2020
202020
Workshop on laboratory protocol standards for the molecular methods database
T Klingström, L Soldatova, R Stevens, TE Roos, MA Swertz, KM Müller, ...
New biotechnology 30 (2), 109-113, 2013
202013
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
182022
Perspectives on automated composition of workflows in the life sciences
AL Lamprecht, M Palmblad, J Ison, V Schwämmle, MS Al Manir, I Altintas, ...
F1000Research 10, 2021
162021
Bioimage analysis workflows: community resources to navigate through a complex ecosystem
P Paul-Gilloteaux, S Tosi, JK Hériché, A Gaignard, H Ménager, R Marée, ...
F1000Research 10, 2021
162021
Using registries to integrate bioinformatics tools and services into workbench environments
H Ménager, M Kala¹, K Rapacki, J Ison
International Journal on Software Tools for Technology Transfer 18, 581-586, 2016
142016
EDAM: The bioscientific data analysis ontology (update 2021)[version 1; not peer reviewed]
M Black, L Lamothe, H Eldakroury, M Kierkegaard, A Priya, A Machinda, ...
F1000, 2021
122021
Norwegian e-infrastructure for life sciences (NeLS)
KM Tekle, S Gundersen, K Klepper, LA Bongo, IA Raknes, X Li, W Zhang, ...
F1000Research 7, 2018
122018
biotoolsSchema: a formalized schema for bioinformatics software description
J Ison, H Ienasescu, E Rydza, P Chmura, K Rapacki, A Gaignard, ...
GigaScience 10 (1), giaa157, 2021
112021
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