Philippe Thomas

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Ulf LeserKnowledge Management in Bioinformatics, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de
Roland RollerGerman Research Center for Artificial Intelligence (DFKI)Verified email at dfki.de
Illés SoltVerified email at gravityrd.com
Jörg HakenbergIllumina, Inc.Verified email at illumina.com
Mariana Lara NevesGerman Federal Institute for Risk AssessmentVerified email at bfr.bund.de
Domonkos TikkGravity R&D, a Taboola companyVerified email at taboola.com
Leonhard HennigSenior Researcher, Deutsches Forschungszentrum für Künstliche IntelligenzVerified email at dfki.de
Tim RocktäschelProfessor of AI at UCL, Open-Endedness Team Lead at Google DeepMind, Fellow ELLISVerified email at cs.ucl.ac.uk
Roman KlingerProfessor for Fundamentals of Natural Language Processing, University of BambergVerified email at uni-bamberg.de
Antonio Jimeno Yepesunstructured.ioVerified email at unstructured.io
Martin Hofmann-ApitiusProfessor für Angewandte Life Science Informatik, Universität BonnVerified email at scai.fraunhofer.de
Angela RelógioMSH-Medical School Hamburg and Charité Medical University of Berlin, GermanyVerified email at charite.de
Johannes StarlingerComputer Science PostDoc, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de
Hans UszkoreitDFKI, Saarland UniversityVerified email at dfki.de
Sven SchmeierChief Engineer, DFKI GmbHVerified email at dfki.de
Aleksandra GabryszakGerman Research Center for Artificial Intelligence (DFKI)Verified email at dfki.de
Christoph M. FriedrichProfessor of Biomedical Computer Science, University of Applied Sciences and Arts, DortmundVerified email at fh-dortmund.de
Rong ChenDirector of Clinical Genome Informatics & Assistant Professor, Mount Sinai School of MedicineVerified email at mssm.edu
Nils BlüthgenCharité Universitätsmedizin Berlin & Humboldt Universität zu BerlinVerified email at charite.de
Marc BuxPhD student, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de

Philippe Thomas

German Research Center for Artificial Intelligence

Verified email at dfki.de

Natural Language Processing


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser PLoS computational biology 6 (7), e1000837, 2010	225	2010
Ras-mediated deregulation of the circadian clock in cancer A Relogio, P Thomas, P Medina-Perez, S Reischl, S Bervoets, E Gloc, ... PLoS genetics 10 (5), e1004338, 2014	187	2014
GeneView: a comprehensive semantic search engine for PubMed P Thomas, J Starlinger, A Vowinkel, S Arzt, U Leser Nucleic acids research 40 (W1), W585-W591, 2012	104	2012
BioCreative III interactive task: an overview C Arighi, P Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC Bioinformatics 12 (Suppl 8), S4, 2011	103	2011
Relation Extraction for Drug-Drug Interactions using Ensemble Learning P Thomas, M Neves, I Solt, D Tikk, U Leser DDIExtraction2011: First Challenge Task: Drug-Drug Interaction Extraction at …, 2011	87	2011
WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting P Thomas, M Neves, T Rocktäschel, U Leser, U den Linden SemEval, 2013	82	2013
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers P Thomas, R Klinger, L Furlong, M Hofmann-Apitius, C Friedrich BMC Bioinformatics 12 (Suppl 4), S4, 2011	67	2011
Findings of the WMT 2017 biomedical translation shared task AJ Yepes, A Névéol, M Neves, K Verspoor, O Bojar, A Boyer, C Grozea, ... Proceedings of the Second Conference on Machine Translation, 234-247, 2017	52	2017
SETH detects and normalizes genetic variants in text P Thomas, T Rocktäschel, J Hakenberg, Y Lichtblau, U Leser Bioinformatics 32 (18), 2883-2885, 2016	43	2016
A detailed error analysis of 13 kernel methods for protein-protein interaction extraction D Tikk, I Solt, P Thomas, U Leser BMC bioinformatics 14, 1-20, 2013	43	2013
Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach R Lehmann, L Childs, P Thomas, M Abreu, L Fuhr, H Herzel, U Leser, ... PloS one 10 (5), e0126283, 2015	42	2015
Findings of the WMT 2020 biomedical translation shared task: Basque, Italian and Russian as new additional languages R Bawden, GM Di Nunzio, C Grozea, IJ Unanue, AJ Yepes, N Mah, ... Fifth Conference on Machine Translation, 658-685, 2020	39	2020
Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions T Bobic, R Klinger, P Thomas, M Hofmann-Apitius, S Birlinghoven, ... ROBUS-UNSUP 2012: Joint Workshop on Unsupervised and Semi-Supervised …, 2012	35	2012
Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation V Seitz, PE Thomas, K Zimmermann, U Paul, A Ehlers, M Joosten, ... Haematologica, haematol. 2010.031138 v1, 2011	31	2011
Not all links are equal: exploiting dependency types for the extraction of protein-protein interactions from text P Thomas, S Pietschmann, I Solt, D Tikk, U Leser BioNLP 2011 Workshop, 2011, 1, 2011	28	2011
Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts J Hakenberg, WY Cheng, P Thomas, YC Wang, AV Uzilov, R Chen BMC bioinformatics 17, 1-13, 2016	25	2016
A german corpus for fine-grained named entity recognition and relation extraction of traffic and industry events M Schiersch, V Mironova, M Schmitt, P Thomas, A Gabryszak, L Hennig Language Resources and Evaluation. International Conference on Language …, 2018	24	2018
Clickbait identification using neural networks P Thomas arXiv preprint arXiv:1710.08721, 2017	24	2017
Twitter Geolocation Prediction Using Neural Networks P Thomas, L Hennig International Conference of the German Society for Computational Linguistics …, 2017	24	2017
Learning protein–protein interaction extraction using distant supervision P Thomas, I Solt, R Klinger, U Leser Proceedings of Workshop on Robust Unsupervised and Semisupervised Methods in …, 2011	24	2011

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