| Exphormer: Sparse transformers for graphs H Shirzad, A Velingker, B Venkatachalam, DJ Sutherland, AK Sinop International Conference on Machine Learning, 31613-31632, 2023 | 101 | 2023 |
| Untangling tanglegrams: comparing trees by their drawings B Venkatachalam, J Apple, KS John, D Gusfield IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (4), 588-597, 2010 | 48 | 2010 |
| Faster algorithms for RNA-folding using the Four-Russians method B Venkatachalam, D Gusfield, Y Frid Algorithms for Molecular Biology 9, 1-12, 2014 | 35 | 2014 |
| Bounds on the performance of p2p networks using tit-for-tat strategies D DeFigueiredo, B Venkatachalam, SF Wu Seventh IEEE International Conference on Peer-to-Peer Computing (P2P 2007 …, 2007 | 30 | 2007 |
| Parametric sequence alignment D Fernández-Baca, B Venkatachalam Handbook of computational molecular biology. Computer and Information …, 2005 | 21* | 2005 |
| Sensitivity analysis in combinatorial optimization D Fernández-Baca, B Venkatachalam Handbook of Approximation Algorithms and Metaheuristics, 2007 | 18* | 2007 |
| Untangling tanglegrams: Comparing trees by their drawings B Venkatachalam, J Apple, K St. John, D Gusfield Bioinformatics Research and Applications: 5th International Symposium, ISBRA …, 2009 | 12 | 2009 |
| Parametric analysis for ungapped Markov models of evolution D Fernández-Baca, B Venkatachalam Combinatorial Pattern Matching: 16th Annual Symposium, CPM 2005, Jeju Island …, 2005 | 2 | 2005 |
| Even sparser graph transformers H Shirzad, H Lin, B Venkatachalam, A Velingker, D Woodruff, ... arXiv preprint arXiv:2411.16278, 2024 | 1 | 2024 |
| A theory for compressibility of graph transformers for transductive learning H Shirzad, H Lin, A Velingker, B Venkatachalam, D Woodruff, ... arXiv preprint arXiv:2411.13028, 2024 | 1 | 2024 |
| Generalizing Tanglegrams B Venkatachalam, D Gusfield | 1 | 2018 |
| Parallelizing the Smith-Waterman Local Alignment Algorithm using CUDA B Venkatachalam February, 2012 | 1 | 2012 |
| Parametric analysis for ungapped Markov models of evolution D Fernández-Baca, B Venkatachalam ACM Transactions on Algorithms (TALG) 5 (4), 1-20, 2009 | 1 | 2009 |
| Software watermarking as a proof of identity: A study of zero knowledge proof based software watermarking B Venkatachalam International Workshop on Digital Watermarking, 299-312, 2005 | 1 | 2005 |
| Parametric Analysis, Duality, and Lattice Polytopes D Fernández-Baca, B Venkatachalam unpublished manuscript, May, 2004 | 1 | 2004 |
| Faster algorithms for RNA-folding using the Four-Russians method Y Frid, D Gusfield, B Venkatachalam | | 2014 |
| Combinatorial Algorithms for Three Problems in Computational Biology B Venkatachalam University of California, Davis, 2013 | | 2013 |
| Session VI-Watermarking of Unconventional Media-Software Watermarking as a Proof of Identity: A Study of Zero Knowledge Proof Based Software Watermarking B Venkatachalam Lecture Notes in Computer Science 3710, 299-312, 2005 | | 2005 |
| Parametric analysis for ungapped Markov models of evolution B Venkatachalam | | 2005 |
| Low-Width Approximations and Sparsification for Scaling Graph Transformers H Shirzad, B Venkatachalam, A Velingker, D Sutherland, D Woodruff NeurIPS 2023 Workshop: New Frontiers in Graph Learning, 0 | | |
