Gordon K Smyth

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Citations	182794	117072
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Wei ShiProfessor, Olivia Newton-John Cancer Research InstituteVerified email at onjcri.org.au
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Yunshun ChenLaboratory Head, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Charity W LawThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Yang LiaoBioinformatics and Cancer Genomics Laboratory, ONJCRIVerified email at onjcri.org.au
Davis J McCarthyHead, Bioinformatics and Cellular Genomics, St Vincent's Institute of Medical ResearchVerified email at svi.edu.au
Di WuAssociate Professor, Biostatistics Department, jointly with Adams Schools Dentistry at University ofVerified email at unc.edu
Mark D. RobinsonFull Professor of Statistical Genomics, University of ZurichVerified email at imls.uzh.ch
Stephen NuttThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Alicia OshlackPeter MacCallum Cancer CentreVerified email at petermac.org
Aaron LunGenentech, Inc.Verified email at gene.com
Peter K. DunnUniversity of the Sunshine CoastVerified email at usc.edu.au
Alexandra L GarnhamThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Göknur GinerPostdoctoral researcherVerified email at wehi.edu.au
Hannah D CoughlanThe Walter & Eliza hall institute of medical researchVerified email at wehi.edu.au
Carolyn de GraafWalter and Eliza Hall InstituteVerified email at wehi.edu.au
Joshy GeorgeDirector, Computational Sciences, Jackson Laboratory for Genomic Medicine, ConnecticutVerified email at jax.org
Waruni AbeysekeraBioinformatics Analyst, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Connie SN Li-Wai-SuenWalter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au

Gordon K Smyth

Division Head, Bioinformatics, Walter and Eliza Hall Institute of Medical Research

Verified email at wehi.edu.au - Homepage

Bioinformatics statistics biostatistics genomics statistical computing


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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data MD Robinson, DJ McCarthy, GK Smyth Bioinformatics 26 (1), 139-140, 2010	33604	2010
limma powers differential expression analyses for RNA-sequencing and microarray studies ME Ritchie, B Phipson, D Wu, Y Hu, CW Law, W Shi, GK Smyth Nucleic acids research 43 (7), e47, 2015	25804	2015
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features Y Liao, GK Smyth, W Shi Bioinformatics 30 (7), 923-930, 2014	16225	2014
Bioconductor: open software development for computational biology and bioinformatics RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ... Genome biology 5 (10), 1-16, 2004	13759	2004
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments GK Smyth Statistical applications in genetics and molecular biology 3 (1), Article 3, 2004	13436	2004
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	6943	2005
Limma: linear models for microarray data user’s guide GK Smyth, N Thorne, J Wettenhall Bioconductor, limma package, 2005	6914*	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	6853	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	6837	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	6837	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	6837	2005
Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack Genome Biology 11, R14, 2010	5679	2010
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts CW Law, Y Chen, W Shi, GK Smyth Genome Biology 15 (2), R29, 2014	5115	2014
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation DJ McCarthy, Y Chen, GK Smyth Nucleic acids research 40 (10), 4288-4297, 2012	4704	2012
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	3247	2015
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote Y Liao, GK Smyth, W Shi Nucleic acids research 41 (10), e108, 2013	2523	2013
Generation of a functional mammary gland from a single stem cell M Shackleton, F Vaillant, KJ Simpson, J Stingl, GK Smyth, ... Nature 439 (7072), 84-88, 2006	2476	2006
Normalization of cDNA microarray data GK Smyth, T Speed Methods 31 (4), 265-273, 2003	2309	2003
ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays Y Hu, GK Smyth Journal of immunological methods 347 (1-2), 70-78, 2009	1893	2009
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads Y Liao, GK Smyth, W Shi Nucleic acids research 47 (8), e47-e47, 2019	1651	2019

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