Michael P H Stumpf

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Tina ToniImperial College London, Massachusetts Institute of TechnologyVerified email at mit.edu
Paul DW KirkUniversity of CambridgeVerified email at mrc-bsu.cam.ac.uk
Juliane LiepeMax Planck Institute for Biophysical ChemistryVerified email at mpibpc.mpg.de
Carsten WiufUniversity of CopenhagenVerified email at math.ku.dk
Thomas ThorneSenior Lecturer in Computer Science, University of SurreyVerified email at surrey.ac.uk
Sarah FilippiSenior Lecturer, Imperial College LondonVerified email at imperial.ac.uk
Chris P BarnesUniversity College LondonVerified email at ucl.ac.uk
Ann BabtieUniversity of ExeterVerified email at exeter.ac.uk
Eric de SilvaHead of Research & Development, UCL Institute of Healthcare EngineeringVerified email at ucl.ac.uk
Michal KomorowskiInstitute of Fundamental Technological Research, Polish Academy of SciencesVerified email at sysbiosig.org
Heather A HarringtonMathematical Institute, University of OxfordVerified email at maths.ox.ac.uk
Thalia E ChanImperial College LondonVerified email at imperial.ac.uk
Martin BuckProfessor of Molecular Microbiology , Imperial College LondonVerified email at imperial.ac.uk
Adam L MacLeanAssistant Professor, University of Southern CaliforniaVerified email at usc.edu
Michele MishtoKing's College London | School of Immunology & Microbial Sciences| Peter Gorer Department ofVerified email at kcl.ac.uk
Mark G ThomasProfessor of Evolutionary Genetics, University College LondonVerified email at ucl.ac.uk
Aaron SimSyntenyVerified email at synteny.ai
Goran JovanovicResearch Professor, Institute of Molecular Genetics and Genetic EngineeringVerified email at imgge.bg.ac.rs
Robert M MayProfessor of Zoology, University of OxfordVerified email at zoo.ox.ac.uk
Ino AgrafiotiEuropean Research Council (ERCEA, LS1 Panel Coordinator)Verified email at ec.europa.eu

Michael P H Stumpf

Professor of Theoretical Systems Biology, University of Melbourne

Verified email at unimelb.edu.au

Theoretical Biology Biomathematics Quantitative Biology Statistical Inference Stochastic Dynamics


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Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems T Toni, D Welch, N Strelkowa, A Ipsen, MPH Stumpf Journal of the Royal Society Interface 6 (31), 187-202, 2009	1819	2009
Evolution of pathogenicity and sexual reproduction in eight Candida genomes G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ... Nature 459 (7247), 657-662, 2009	1219	2009
Estimating the size of the human interactome MPH Stumpf, T Thorne, E De Silva, R Stewart, HJ An, M Lappe, C Wiuf Proceedings of the National Academy of Sciences 105 (19), 6959-6964, 2008	1013	2008
Critical truths about power laws MPH Stumpf, MA Porter Science 335 (6069), 665-666, 2012	743	2012
Subnets of scale-free networks are not scale-free: sampling properties of networks MPH Stumpf, C Wiuf, RM May Proceedings of the National Academy of Sciences 102 (12), 4221-4224, 2005	732	2005
Gene regulatory network inference from single-cell data using multivariate information measures TE Chan, MPH Stumpf, AC Babtie Cell systems 5 (3), 251-267. e3, 2017	520	2017
Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics S Mead, MPH Stumpf, J Whitfield, JA Beck, M Poulter, T Campbell, ... Science 300 (5619), 640-643, 2003	489	2003
A large fraction of HLA class I ligands are proteasome-generated spliced peptides J Liepe, F Marino, J Sidney, A Jeko, DE Bunting, A Sette, PM Kloetzel, ... Science 354 (6310), 354-358, 2016	473	2016
Network motifs: structure does not determine function PJ Ingram, MPH Stumpf, J Stark BMC genomics 7, 1-12, 2006	356	2006
Simulation-based model selection for dynamical systems in systems and population biology T Toni, MPH Stumpf Bioinformatics 26 (1), 104-110, 2010	338	2010
Estimating recombination rates from population-genetic data MPH Stumpf, GAT McVean Nature Reviews Genetics 4 (12), 959-968, 2003	289	2003
AY chromosome census of the British Isles C Capelli, N Redhead, JK Abernethy, F Gratrix, JF Wilson, T Moen, ... Current Biology 13 (11), 979-984, 2003	265	2003
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation J Liepe, P Kirk, S Filippi, T Toni, CP Barnes, MPH Stumpf Nature protocols 9 (2), 439-456, 2014	262	2014
A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania C Capelli, JF Wilson, M Richards, MPH Stumpf, F Gratrix, S Oppenheimer, ... The American Journal of Human Genetics 68 (2), 432-443, 2001	259	2001
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology N Joly, C Engl, G Jovanovic, M Huvet, T Toni, X Sheng, MPH Stumpf, ... FEMS microbiology reviews 34 (5), 797-827, 2010	252	2010
Sensitivity, robustness, and identifiability in stochastic chemical kinetics models M Komorowski, MJ Costa, DA Rand, MPH Stumpf Proceedings of the National Academy of Sciences 108 (21), 8645-8650, 2011	243	2011
Phylogenetic diversity of stress signalling pathways in fungi E Nikolaou, I Agrafioti, M Stumpf, J Quinn, I Stansfield, AJP Brown BMC Evolutionary Biology 9, 1-18, 2009	243	2009
Statistical inference of the time-varying structure of gene-regulation networks S Lebre, J Becq, F Devaux, MPH Stumpf, G Lelandais BMC systems biology 4, 1-16, 2010	224	2010
Maximizing the information content of experiments in systems biology J Liepe, S Filippi, M Komorowski, MPH Stumpf PLoS computational biology 9 (1), e1002888, 2013	222	2013
Stem cell differentiation as a non-Markov stochastic process PS Stumpf, RCG Smith, M Lenz, A Schuppert, FJ Müller, A Babtie, ... Cell Systems 5 (3), 268-282. e7, 2017	192	2017

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