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Thomas M. Schmidt
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Structure, function and diversity of the healthy human microbiome
HMP Consortium
Nature 486 (7402), 207-214, 2012
11121*2012
The RDP (ribosomal database project) continues
BL Maidak, JR Cole, TG Lilburn, CT Parker Jr, PR Saxman, JM Stredwick, ...
Nucleic acids research 28 (1), 173-174, 2000
3171*2000
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
24932012
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
JR Cole, B Chai, TL Marsh, RJ Farris, Q Wang, SA Kulam, S Chandra, ...
Nucleic acids research 31 (1), 442-443, 2003
16922003
Fundamentals of microbial community resistance and resilience
A Shade, H Peter, SD Allison, DL Baho, M Berga, H Bürgmann, DH Huber, ...
Frontiers in microbiology 3, 417, 2012
15342012
Identification of the uncultured bacillus of Whipple’s disease
DA Relman, TM Schmidt, RP MacDermott, S Falkow
New England journal of medicine 327 (5), 293-301, 1992
14281992
Decreased Diversity of the Fecal Microbiome in Recurrent Clostridium difficile—Associated Diarrhea
JY Chang, DA Antonopoulos, A Kalra, A Tonelli, WT Khalife, TM Schmidt, ...
The Journal of infectious diseases 197 (3), 435-438, 2008
13562008
rRNA operon copy number reflects ecological strategies of bacteria
JA Klappenbach, JM Dunbar, TM Schmidt
Applied and environmental microbiology 66 (4), 1328-1333, 2000
13332000
rrndb: the ribosomal RNA operon copy number database
JA Klappenbach, PR Saxman, JR Cole, TM Schmidt
Nucleic acids research 29 (1), 181-184, 2001
12312001
Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
TM Schmidt, EF DeLong, NR Pace
Journal of bacteriology 173 (14), 4371-4378, 1991
12061991
The agent of bacillary angiomatosis: an approach to the identification of uncultured pathogens
DA Relman, JS Loutit, TM Schmidt, S Falkow, LS Tompkins
New England journal of medicine 323 (23), 1573-1580, 1990
11511990
A new version of the RDP (Ribosomal Database Project)
BL Maidak, JR Cole, CT Parker Jr, GM Garrity, N Larsen, B Li, TG Lilburn, ...
Nucleic acids research 27 (1), 171-173, 1999
10221999
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
SF Stoddard, BJ Smith, R Hein, BRK Roller, TM Schmidt
Nucleic acids research 43 (D1), D593-D598, 2015
10052015
Comparison of the respiratory microbiome in healthy nonsmokers and smokers
A Morris, JM Beck, PD Schloss, TB Campbell, K Crothers, JL Curtis, ...
American journal of respiratory and critical care medicine 187 (10), 1067-1075, 2013
8672013
Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals
CM Bassis, JR Erb-Downward, RP Dickson, CM Freeman, TM Schmidt, ...
MBio 6 (2), 10.1128/mbio. 00037-15, 2015
7932015
Gut microbiome–derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease
ND Mathewson
Nature Immunology 17, 505-513, 2016
6952016
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation
DA Antonopoulos, SM Huse, HG Morrison, TM Schmidt, ML Sogin, ...
Infection and immunity 77 (6), 2367-2375, 2009
6732009
Dynamics of human gut microbiota and short-chain fatty acids in response to dietary interventions with three fermentable fibers
NT Baxter, AW Schmidt, A Venkataraman, KS Kim, C Waldron, ...
MBio 10 (1), 10.1128/mbio. 02566-18, 2019
6272019
Natural endophytic association between Rhizobium leguminosarum bv. trifolii and rice roots and assessment of its potential to promote rice growth
YG Yanni, RY Rizk, V Corich, A Squartini, K Ninke, S Philip-Hollingsworth, ...
Opportunities for Biological Nitrogen Fixation in Rice and Other Non-Legumes …, 1997
6271997
New strategies for cultivation and detection of previously uncultured microbes
BS Stevenson, SA Eichorst, JT Wertz, TM Schmidt, JA Breznak
Applied and environmental microbiology 70 (8), 4748-4755, 2004
5772004
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Articles 1–20