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Premal Shah
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Year
Rate-limiting steps in yeast protein translation
P Shah, Y Ding, M Niemczyk, G Kudla, JB Plotkin
Cell 153 (7), 1589-1601, 2013
5062013
Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation
DE Weinberg*, P Shah*, SW Eichhorn, JA Hussmann, JB Plotkin, ...
Cell Reports 14 (7), 1787-1799, 2016
3872016
Non-optimal codon usage is a mechanism to achieve circadian clock conditionality
Y Xu, P Ma, P Shah, A Rokas, Y Liu, CH Johnson
Nature 495, 116-120, 2013
1912013
Contingency and entrenchment in protein evolution under purifying selection
P Shah*, DM McCandlish*, JB Plotkin
PNAS 112 (25), E3226-E3235, 2015
1702015
Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift
P Shah, MA Gilchrist
PNAS 108 (25), 10231, 2011
1632011
Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias
P Shah, MA Gilchrist
PLoS Genetics 6 (9), e1001128, 2010
1202010
Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae)
ML Niemiller, BM Fitzpatrick, P Shah, L Schmitz, TJ Near
Evolution 67 (3), 732-748, 2013
992013
A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis
R Gupta, AS Walvekar, S Liang, Z Rashida, P Shah‡, S Laxman‡
eLife 8, 2019
572019
Epistasis and the dynamics of reversion in molecular evolution
DM McCandlish, P Shah, JB Plotkin
Genetics, 116.188961, 2016
562016
The role of epistasis in protein evolution
DM McCandlish, E Rajon, P Shah, Y Ding, JB Plotkin
Nature 497 (7451), E1-E2, 2013
552013
Estimating gene expression and codon-specific translational efficiencies, mutation biases, and selection coefficients from genomic data alone
MA Gilchrist, WC Chen, P Shah, CL Landerer, R Zaretzki
Genome biology and evolution 7 (6), 1559-1579, 2015
432015
Riboviz: analysis and visualization of ribosome profiling datasets
O Carja, T Xing, EWJ Wallace, JB Plotkin, P Shah
BMC bioinformatics 18 (1), 1-4, 2017
372017
Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation
MA Gilchrist, P Shah, R Zaretzki
Genetics 183 (4), 1493-1505, 2009
342009
Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP 1/IGF 2 BP 1
P Chatterji, PA Williams, KA Whelan, FC Samper, SF Andres, LA Simon, ...
EMBO reports 20 (6), e47074, 2019
282019
Weak 5′-mRNA secondary structures in short eukaryotic genes
Y Ding, P Shah, JB Plotkin
Genome Biology and Evolution 4 (10), 1046-1053, 2012
262012
Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans
IA Nikonorova, J Wang, AL Cope, PE Tilton, KM Power, JD Walsh, ...
Current Biology 32 (9), 1924-1936. e6, 2022
232022
The LIN28B–IMP1 post-transcriptional regulon has opposing effects on oncogenic signaling in the intestine
P Chatterji, KE Hamilton, S Liang, SF Andres, HRS Wijeratne, R Mizuno, ...
Genes & development 32 (15-16), 1020-1034, 2018
232018
O-GlcNAcylation alters the selection of mRNAs for translation and promotes 4E-BP1-dependent mitochondrial dysfunction in retina
SK Dierschke, WP Miller, JS Favate, P Shah, YI Kawasawa, AC Salzberg, ...
Journal of Biological Chemistry 294 (14), 5508 - 5520, 2019
212019
XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing
JT Winkelman, C Pukhrambam, IO Vvedenskaya, Y Zhang, DM Taylor, ...
Molecular cell 79 (5), 797-811. e8, 2020
202020
A codon model of nucleotide substitution with selection on synonymous codon usage
L Kubatko, P Shah, R Herbei, MA Gilchrist
Molecular Phylogenetics and Evolution 94, 290-297, 2016
192016
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Articles 1–20