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Plastics in the North Atlantic garbage patch: a boat-microbe for hitchhikers and plastic degraders
D Debroas, A Mone, A Ter Halle
Science of the total environment 599, 1222-1232, 2017
Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters
M Hugoni, N Taib, D Debroas, I Domaizon, I Jouan Dufournel, G Bronner, ...
Proceedings of the National Academy of Sciences 110 (15), 6004-6009, 2013
Assessing the diversity and specificity of two freshwater viral communities through metagenomics
S Roux, F Enault, A Robin, V Ravet, S Personnic, S Theil, J Colombet, ...
PloS one 7 (3), e33641, 2012
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
S Roux, J Tournayre, A Mahul, D Debroas, F Enault
BMC bioinformatics 15, 1-12, 2014
Genetic diversity of small eukaryotes in lakes differing by their trophic status
M Lefranc, A Thénot, C Lepere, D Debroas
Applied and environmental microbiology 71 (10), 5935-5942, 2005
Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads
S Roux, M Krupovic, A Poulet, D Debroas, F Enault
PloS one 7 (7), e40418, 2012
A strong link between marine microbial community composition and function challenges the idea of functional redundancy
PE Galand, O Pereira, C Hochart, JC Auguet, D Debroas
The ISME journal 12 (10), 2470-2478, 2018
Metavir: a web server dedicated to virome analysis
S Roux, M Faubladier, A Mahul, N Paulhe, A Bernard, D Debroas, ...
Bioinformatics 27 (21), 3074-3075, 2011
Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015
M Bisseux, J Colombet, A Mirand, AM Roque-Afonso, F Abravanel, ...
Eurosurveillance 23 (7), 17-00237, 2018
Short‐term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes
JF Mangot, I Domaizon, N Taib, N Marouni, E Duffaud, G Bronner, ...
Environmental Microbiology 15 (6), 1745-1758, 2013
Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget–France)
D Debroas, JF Humbert, F Enault, G Bronner, M Faubladier, E Cornillot
Environmental microbiology 11 (9), 2412-2424, 2009
Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations
E Capo, C Giguet-Covex, A Rouillard, K Nota, PD Heintzman, A Vuillemin, ...
Quaternary 4 (1), 6, 2021
Active microorganisms thrive among extremely diverse communities in cloud water
P Amato, M Joly, L Besaury, A Oudart, N Taib, AI Moné, L Deguillaume, ...
PloS one 12 (8), e0182869, 2017
Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community
C Lepère, I Domaizon, D Debroas
Applied and environmental microbiology 74 (10), 2940-2949, 2008
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
S Roux, M Krupovic, D Debroas, P Forterre, F Enault
Open biology 3 (12), 130160, 2013
Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France
AC Lehours, C Bardot, A Thenot, D Debroas, G Fonty
Applied and Environmental Microbiology 71 (11), 7389-7400, 2005
Structural diversity of bacterial communities associated with bloom-forming freshwater cyanobacteria differs according to the cyanobacterial genus
I Louati, N Pascault, D Debroas, C Bernard, JF Humbert, J Leloup
PloS one 10 (11), e0140614, 2015
Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data
D Debroas, I Domaizon, JF Humbert, L Jardillier, C Lepère, A Oudart, ...
FEMS Microbiology Ecology 93 (4), fix023, 2017
Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems
D Singer, CVW Seppey, G Lentendu, M Dunthorn, D Bass, L Belbahri, ...
Environment International 146, 106262, 2021
Bacterial communities associated with Microcystis colonies differ from free‐living communities living in the same ecosystem
B Parveen, V Ravet, C Djediat, I Mary, C Quiblier, D Debroas, JF Humbert
Environmental Microbiology Reports 5 (5), 716-724, 2013
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