Alan Ruttenberg
Alan Ruttenberg
Senior Research Associate, Department of Philosophy, University at Buffalo
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Cited by
Cited by
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ...
Nature biotechnology 25 (11), 1251-1255, 2007
OWL 2 web ontology language: Structural specification and functional-style syntax
B Motik, PF Patel-Schneider, B Parsia, C Bock, A Fokoue, P Haase, ...
W3C Recommendation 27, 2009
The ontology for biomedical investigations
A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ...
PloS one 11 (4), e0154556, 2016
Advancing translational research with the Semantic Web
A Ruttenberg, T Clark, W Bug, M Samwald, O Bodenreider, H Chen, ...
BMC bioinformatics 8, 1-16, 2007
Modeling biomedical experimental processes with OBI
RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ...
Journal of biomedical semantics 1, 1-11, 2010
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability
AD Diehl, TF Meehan, YM Bradford, MH Brush, WM Dahdul, DS Dougall, ...
Journal of biomedical semantics 7, 1-10, 2016
Finding our way through phenotypes
AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ...
PLoS biology 13 (1), e1002033, 2015
OntoFox: web-based support for ontology reuse
Z Xiang, M Courtot, RR Brinkman, A Ruttenberg, Y He
BMC research notes 3, 1-12, 2010
The SWAN biomedical discourse ontology
P Ciccarese, E Wu, G Wong, M Ocana, J Kinoshita, A Ruttenberg, T Clark
Journal of biomedical informatics 41 (5), 739-751, 2008
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
E Ong, Z Xiang, B Zhao, Y Liu, Y Lin, J Zheng, C Mungall, M Courtot, ...
Nucleic acids research 45 (D1), D347-D352, 2017
Ontobee: A Linked Data Server and Browser for Ontology Terms
Z Xiang, C Mungall, A Ruttenberg, Y He
International Conference on Biomedical Ontology, 2011
MIREOT: the minimum information to reference an external ontology term
M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ...
Applied Ontology 6 (1), 23-33, 2011
Life sciences on the Semantic Web: the Neurocommons and beyond
A Ruttenberg, JA Rees, M Samwald, MS Marshall
Briefings in bioinformatics 10 (2), 193-204, 2009
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ...
Nucleic acids research 45 (D1), D339-D346, 2017
Protein Ontology: a controlled structured network of protein entities
DA Natale, CN Arighi, JA Blake, CJ Bult, KR Christie, J Cowart, ...
Nucleic acids research 42 (D1), D415-D421, 2014
MIREOT: the minimum information to reference an external ontology term
M Courtot, F Gibson, A Lister, J Malone, D Schober, RR Brinkman, ...
Aug-2009, 2009
Basic Formal Ontology 2.0: Specification and user’s guide
B Smith, M Almeida, J Bona, M Brochhausen, W Ceusters, M Courtot, ...
National Center for Ontological Research: Buffalo, NY, USA, 50, 2015
BFO: Basic formal ontology
JN Otte, J Beverley, A Ruttenberg
Applied ontology 17 (1), 17-43, 2022
Computational knowledge integration in biopharmaceutical research
D Ficenec, M Osborne, J Pradines, D Richards, R Felciano, RJ Cho, ...
Briefings in bioinformatics 4 (3), 260-278, 2003
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