Ilia Minkin
Ilia Minkin
Johns Hopkins University: Home
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Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes
I Minkin, S Pham, P Medvedev
Bioinformatics 33 (24), 4024-4032, 2017
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ
I Minkin, P Medvedev
Nature communications 11 (1), 6327, 2020
C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison
I Minkin, H Pham, E Starostina, N Vyahhi, S Pham
F1000Research 2, 2013
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure
A Varabyou, MJ Sommer, B Erdogdu, I Shinder, I Minkin, KH Chao, S Park, ...
Genome biology 24 (1), 249, 2023
Scalable pairwise whole-genome homology mapping of long genomes with BubbZ
I Minkin, P Medvedev
IScience 23 (6), 2020
Highly accurate isoform identification for the human transcriptome
MJ Sommer, S Cha, A Varabyou, N Rincon, S Park, I Minkin, M Pertea, ...
bioRxiv, 2022.06. 08.495354, 2022
Conservation assessment of human splice site annotation based on a 470-genome alignment
I Minkin, SL Salzberg
Biorxiv, 2023.12. 01.569581, 2023
Applications of the Compacted de Bruijn Graph in Comparative Genomics
I Minkin
The Pennsylvania State University, 2020
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