| Inferring domain–domain interactions from protein–protein interactions M Deng, S Mehta, F Sun, T Chen Genome research 12 (10), 1540-1548, 2002 | 636 | 2002 |
| Prediction of protein function using protein-protein interaction data M Deng, K Zhang, S Mehta, T Chen, F Sun Journal of Computational Biology 10 (6), 947-960, 2003 | 476 | 2003 |
| A dynamic programming algorithm for haplotype block partitioning K Zhang, M Deng, T Chen, MS Waterman, F Sun Proceedings of the National Academy of Sciences 99 (11), 7335-7339, 2002 | 449 | 2002 |
| KERNEL-BASED DATA FUSION AND ITS APPLICATION TO PROTEIN FUNCTION PREDICTION IN YEAST Online supplement at http://www. noble. gs. washington. edu/yeast. GRG Lanckriet, M Deng, N Cristianini, MI Jordan Proceedings of the Pacific Symposium 6, 10, 2004 | 433 | 2004 |
| Assessment of the reliability of protein-protein interactions and protein function prediction. M Deng, F Sun, T Chen Pacific Symposium on Biocomputing 8, 140-151, 2003 | 233 | 2003 |
| An integrated probabilistic model for functional prediction of proteins M Deng, T Chen, F Sun Journal of Computational Biology 11 (2-3), 463-475, 2004 | 224 | 2004 |
| Mapping Gene Ontology to proteins based on protein-protein interaction data M Deng, Z Tu, F Sun, T Chen Bioinformatics, 2004 | 218 | 2004 |
| Research in computational molecular biology K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun | 196* | 2012 |
| CCLasso: correlation inference for compositional data through Lasso H Fang, C Huang, H Zhao, M Deng Bioinformatics, btv349, 2015 | 194 | 2015 |
| New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing K Song, J Ren, G Reinert, M Deng, MS Waterman, F Sun Briefings in bioinformatics, bbt067, 2013 | 193 | 2013 |
| An integrated approach to the prediction of domain-domain interactions H Lee, M Deng, F Sun, T Chen BMC bioinformatics 7 (1), 269, 2006 | 157 | 2006 |
| A Lasso regression model for the construction of microRNA-target regulatory networks Y Lu, Y Zhou, W Qu, M Deng, C Zhang Bioinformatics 27 (17), 2406-2413, 2011 | 135 | 2011 |
| Diffusion kernel-based logistic regression models for protein function prediction H Lee, Z Tu, M Deng, F Sun, T Chen Omics: a journal of integrative biology 10 (1), 40-55, 2006 | 133 | 2006 |
| Stochastic model of yeast cell-cycle network Y Zhang, M Qian, Q Ouyang, M Deng, F Li, C Tang Physica D: Nonlinear Phenomena 219 (1), 35-39, 2006 | 107 | 2006 |
| Alignment-free sequence comparison based on next generation sequencing reads K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun Research in computational molecular biology, 272-285, 2012 | 99 | 2012 |
| Comparison of metagenomic samples using sequence signatures B Jiang, K Song, J Ren, M Deng, F Sun, X Zhang BMC genomics 13 (1), 730, 2012 | 90 | 2012 |
| Alignment-free sequence comparison based on next-generation sequencing reads K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun Journal of Computational Biology 20 (2), 64-79, 2013 | 88 | 2013 |
| Differential Network Analysis via the Lasso Penalized D-Trace Loss H Yuan, R Xi, M Deng arXiv preprint arXiv:1511.09188, 2015 | 86 | 2015 |
| RNA editome in rhesus macaque shaped by purifying selection JY Chen, Z Peng, R Zhang, XZ Yang, BC Tan, H Fang, CJ Liu, M Shi, ... PLoS Genet 10 (4), e1004274, 2014 | 86 | 2014 |
| Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array X Hang, P Li, Z Li, W Qu, Y Yu, H Li, Z Shen, H Zheng, Y Gao, Y Wu, ... BMC genomics 10 (1), 126, 2009 | 76 | 2009 |
