| The Capsaspora genome reveals a complex unicellular prehistory of animals H Suga, Z Chen, A De Mendoza, A Sebé-Pedrós, MW Brown, E Kramer, ... Nature communications 4 (1), 2325, 2013 | 293 | 2013 |
| Cnidarian cell type diversity and regulation revealed by whole-organism single-cell RNA-Seq A Sebé-Pedrós, B Saudemont, E Chomsky, F Plessier, MP Mailhé, ... Cell 173 (6), 1520-1534. e20, 2018 | 272 | 2018 |
| The origin of Metazoa: a unicellular perspective A Sebé-Pedrós, BM Degnan, I Ruiz-Trillo Nature Reviews Genetics 18 (8), 498-512, 2017 | 261 | 2017 |
| Ancient origin of the integrin-mediated adhesion and signaling machinery A Sebé-Pedrós, AJ Roger, FB Lang, N King, I Ruiz-Trillo Proceedings of the National Academy of Sciences 107 (22), 10142-10147, 2010 | 257 | 2010 |
| Early metazoan cell type diversity and the evolution of multicellular gene regulation A Sebé-Pedrós, E Chomsky, K Pang, D Lara-Astiaso, F Gaiti, Z Mukamel, ... Nature ecology & evolution 2 (7), 1176-1188, 2018 | 235 | 2018 |
| MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions Y Baran, A Bercovich, A Sebe-Pedros, Y Lubling, A Giladi, E Chomsky, ... Genome biology 20 (1), 1-19, 2019 | 230 | 2019 |
| Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki A Sebé-Pedrós, A de Mendoza, BF Lang, BM Degnan, I Ruiz-Trillo Molecular biology and evolution 28 (3), 1241-1254, 2011 | 221 | 2011 |
| Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages A de Mendoza, A Sebé-Pedrós, MS Šestak, M Matejčić, G Torruella, ... Proceedings of the National Academy of Sciences 110 (50), E4858-E4866, 2013 | 215 | 2013 |
| Regulated aggregative multicellularity in a close unicellular relative of metazoa A Sebé-Pedrós, M Irimia, J Del Campo, H Parra-Acero, C Russ, ... Elife 2, e01287, 2013 | 176 | 2013 |
| The dynamic regulatory genome of Capsaspora and the origin of animal multicellularity A Sebé-Pedrós, C Ballaré, H Parra-Acero, C Chiva, JJ Tena, E Sabidó, ... Cell 165 (5), 1224-1237, 2016 | 173 | 2016 |
| The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity A De Mendoza, A Sebe-Pedros, I Ruiz-Trillo Genome biology and evolution 6 (3), 606-619, 2014 | 171 | 2014 |
| Evolution and classification of myosins, a paneukaryotic whole-genome approach A Sebe-Pedros, X Grau-Bove, TA Richards, I Ruiz-Trillo Genome biology and evolution 6 (2), 290-305, 2014 | 141 | 2014 |
| Premetazoan Origin of the Hippo Signaling Pathway A Sebé-Pedrós, Y Zheng, I Ruiz-Trillo, D Pan Cell Reports 1 (1), 13-20, 2012 | 125 | 2012 |
| A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity S Levy, A Elek, X Grau-Bové, S Menéndez-Bravo, M Iglesias, A Tanay, ... Cell 184 (11), 2973-2987. e18, 2021 | 108 | 2021 |
| Early evolution of the T-box transcription factor family A Sebé-Pedrós, A Ariza-Cosano, MT Weirauch, S Leininger, A Yang, ... Proceedings of the National Academy of Sciences 110 (40), 16050-16055, 2013 | 99 | 2013 |
| Insights into the origin of metazoan filopodia and microvilli A Sebé-Pedrós, P Burkhardt, N Sánchez-Pons, SR Fairclough, BF Lang, ... Molecular biology and evolution 30 (9), 2013-2023, 2013 | 85 | 2013 |
| Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi G Torruella, X Grau-Bové, D Moreira, SA Karpov, JA Burns, ... Communications Biology 1 (1), 231, 2018 | 75 | 2018 |
| The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin X Grau-Bové, A Sebé-Pedrós, I Ruiz-Trillo Molecular biology and evolution 32 (3), 726-739, 2015 | 70 | 2015 |
| High-throughput proteomics reveals the unicellular roots of animal phosphosignaling and cell differentiation A Sebé-Pedrós, MI Peńa, S Capella-Gutiérrez, M Antó, T Gabaldón, ... Developmental cell 39 (2), 186-197, 2016 | 62 | 2016 |
| A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states C Ku, U Sheyn, A Sebé-Pedrós, S Ben-Dor, D Schatz, A Tanay, ... Science Advances 6 (21), eaba4137, 2020 | 49 | 2020 |
Ińaki Ruiz-TrilloICREA research professor at Institut de Biologia Evolutiva (CSIC-UPF)Verified email at ibe.upf-csic.es
