Atul Kakrana
Title
Cited by
Cited by
Year
The asparagus genome sheds light on the origin and evolution of a young Y chromosome
A Harkess, J Zhou, C Xu, JE Bowers, R Van der Hulst, S Ayyampalayam, ...
Nature communications 8 (1), 1-10, 2017
1212017
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
S Arikit, R Xia, A Kakrana, K Huang, J Zhai, Z Yan, O Valdés-López, ...
The Plant Cell 26 (12), 4584-4601, 2014
1162014
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
A Kakrana, R Hammond, P Patel, M Nakano, BC Meyers
Nucleic acids research 42 (18), e139-e139, 2014
672014
Composition and Expression of Conserved MicroRNA Genes in Diploid Cotton (Gossypium) Species
L Gong, A Kakrana, S Arikit, BC Meyers, JF Wendel
Genome Biology and Evolution 5 (12), 2449-2459, 2013
402013
iSyTE 2.0: a database for expression-based gene discovery in the eye
A Kakrana, A Yang, D Anand, D Djordjevic, D Ramachandruni, A Singh, ...
Nucleic acids research 46 (D1), D875-D885, 2018
352018
Compound mouse mutants of bZIP transcription factors Mafg and Mafk reveal a regulatory network of non-crystallin genes associated with cataract
SA Agrawal, D Anand, AD Siddam, A Kakrana, S Dash, DA Scheiblin, ...
Human genetics 134 (7), 717-735, 2015
332015
Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
A Kakrana, SM Mathioni, K Huang, R Hammond, L Vandivier, P Patel, ...
Genome research 28 (9), 1333-1344, 2018
292018
The dicer-like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize
BE Thompson, C Basham, R Hammond, Q Ding, A Kakrana, TF Lee, ...
The Plant Cell 26 (12), 4702-4717, 2014
282014
The RNA-binding protein Celf1 post-transcriptionally regulates p27Kip1 and Dnase2b to control fiber cell nuclear degradation in lens development
AD Siddam, C Gautier-Courteille, L Perez-Campos, D Anand, A Kakrana, ...
PLoS genetics 14 (3), e1007278, 2018
252018
Characterization of plant small RNAs by next generation sequencing
SM Mathioni, A Kakrana, BC Meyers
Current protocols in plant biology 2 (1), 39-63, 2017
212017
miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis
P Patel, SD Ramachandruni, A Kakrana, M Nakano, BC Meyers
Bioinformatics 32 (3), 450-452, 2016
192016
Reproductive phasi RNA s in grasses are compositionally distinct from other classes of small RNA s
P Patel, S Mathioni, A Kakrana, H Shatkay, BC Meyers
New Phytologist 220 (3), 851-864, 2018
182018
PHASIS: a computational suite for de novo discovery and characterization of phased, siRNA-generating loci and their miRNA triggers
A Kakrana, P Li, P Patel, R Hammond, D Anand, SM Mathioni, BC Meyers
BioRxiv, 158832, 2017
162017
Host-delivered RNAi-mediated root-knot nematode resistance in Arabidopsis by targeting splicing factor and integrase genes
A Kumar, A Kakrana, A Sirohi, K Subramaniam, R Srinivasan, MZ Abdin, ...
Journal of General Plant Pathology 83 (2), 91-97, 2017
142017
RNA sequencing-based transcriptomic profiles of embryonic lens development for cataract gene discovery
D Anand, A Kakrana, AD Siddam, H Huang, I Saadi, SA Lachke
Human genetics 137 (11), 941-954, 2018
122018
Post‐transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli
P Fourounjian, J Tang, B Tanyolac, Y Feng, B Gelfand, A Kakrana, M Tu, ...
The Plant Journal 98 (6), 1120-1133, 2019
92019
Identification, validation and utilization of novel nematode-responsive root-specific promoters in Arabidopsis for inducing host-delivered RNAi mediated root-knot nematode …
A Kakrana, A Kumar, V Satheesh, MZ Abdin, K Subramaniam, ...
Frontiers in plant science 8, 2049, 2017
62017
Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants
P Patel, SM Mathioni, R Hammond, AE Harkess, A Kakrana, S Arikit, ...
Plant Physiology 185 (4), 1764-1782, 2021
42021
Transcriptome landscape of early lens development
SA Lachke, A Kakrana, AD Siddam, I Saadi, D Anand
Investigative Ophthalmology & Visual Science 59 (9), 894-894, 2018
2018
Sequencing of Spirodela polyrhiza miRNAs and their Targets in Diverse Conditions
P Fourounjian, J Tang, MB Tanyolac, F Yaping, A Kakrana, B Gelfand, ...
Plant and Animal Genome XXVI Conference (January 13-17, 2018), 2018
2018
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